RNA id: TU136316


Basic Information

Item Value
RNA id TU136316
length 703
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G108948
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2052991 ~ 2057622 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attaacactgactgactggacactacagtacattaacactgactgactgactggacactacagtacattaacactgactgactgactggacactacagcacattaacactgactgactgactggacactacagcacattaacactgactgactggacactacagcacattaacactgactgactggacactacagcacattaacactgactgactgactggacactacagtacattaacactgactgactgactggacactacagtacattaacactgactgactggacactacagcacattaacactgactgactggacactacagcacattaacactgactgactggacactgcagcacattaacactgactgactggacactacagcacattaacactgacagacagaatGACTCCGCCACCCCACTCACCCTCCTACGCCCGCCTCTCTGTGTGACCAGGCAGGACCTGTCCAGGCACATGTAGCCCCCGATCACCTCGATCTCCTCCGCAGTGGGGTACCTCTTCTTGCCCTTCGTGGAGTCCCCTGCCCCCCCGGCACCGTCCGCCCTGGCTGCCTGGCCCCCGGGGGCAGGGGGCAGCCCGTTGGGGAGTCCTGCCTGCGAGGGGGAGGacggggaggtgggggtggcTTTGGCCCCTCCGGCTGACGGCCCCATCTTCCTGGGGTTGATGGTGAT

Function

GO:

id name namespace
GO:0051128 regulation of cellular component organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136170 lncRNA downstream 166715 1885965 ~ 1886276 (-) True G108834
TU136135 lncRNA downstream 269425 1734195 ~ 1783566 (-) True G108805
TU136111 lncRNA downstream 331860 1719629 ~ 1721131 (-) True G108789
TU136114 lncRNA downstream 382360 1664948 ~ 1670631 (-) True G108791
TU136113 lncRNA downstream 389958 1661753 ~ 1663033 (-) True G108790
TU136289 lncRNA upstream 40196 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA upstream 70171 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA upstream 70171 2127793 ~ 2130255 (-) True G108938
TU136514 lncRNA upstream 288900 2346522 ~ 2390552 (-) True G109090
TU136517 lncRNA upstream 293132 2350754 ~ 2356238 (-) True G109091
AMCG00006316 mRNA downstream 18756 2027136 ~ 2034235 (-) True AMCG00006316
AMCG00006313 mRNA downstream 31126 2020894 ~ 2021865 (-) False AMCG00006313
AMCG00006315 mRNA downstream 36057 2011362 ~ 2016934 (-) True AMCG00006315
AMCG00006314 mRNA downstream 53701 1991302 ~ 1999290 (-) True AMCG00006314
AMCG00006307 mRNA downstream 120589 1930634 ~ 1932402 (-) True AMCG00006307
AMCG00006320 mRNA upstream 39951 2097573 ~ 2099149 (-) True AMCG00006320
AMCG00006322 mRNA upstream 41545 2099167 ~ 2102889 (-) True AMCG00006322
AMCG00006321 mRNA upstream 66750 2124372 ~ 2128938 (-) True AMCG00006321
AMCG00006319 mRNA upstream 79202 2136824 ~ 2140157 (-) True AMCG00006319
AMCG00006325 mRNA upstream 148985 2206607 ~ 2208884 (-) True AMCG00006325
TU136306 other downstream 28848 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 171154 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 328143 1722561 ~ 1724848 (-) True AMCG00006298
TU136106 other downstream 392987 1646480 ~ 1660004 (-) True G108784
TU136076 other downstream 542451 1368082 ~ 1510540 (-) False AMCG00006279
TU136304 other upstream 40196 2097818 ~ 2130255 (-) False G108938
TU136502 other upstream 266509 2324131 ~ 2329991 (-) True AMCG00006328
TU137277 other upstream 2107312 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3956482 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4727691 6785313 ~ 6785851 (-) True G110140

Expression Profile