RNA id: TU136517


Basic Information

Item Value
RNA id TU136517
length 358
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G109091
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2350754 ~ 2356238 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtatacactcacctaaaggattattaggaacaccatactaatactgtgtttgtgtcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggccgtggcatttaaacaatgcccaattggcactaaggggcctaaagtgtgccaagaaaacatcccccacaccattacaccaccaccaccagcctgcacagtggtaacaaggcatgatggatccatgttctcattctgtttacGCCAAATTCTGACTCTACCATCTGAATGTCTCAACAGAAATCGAGAcagatcagaccaggcaacatttttccagtcttcaactGTCCAATTTTGGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136289 lncRNA downstream 220499 2097818 ~ 2130255 (-) False G108938
TU136288 lncRNA downstream 220499 2127793 ~ 2130255 (-) False G108938
TU136294 lncRNA downstream 220499 2127793 ~ 2130255 (-) True G108938
TU136316 lncRNA downstream 293132 2052991 ~ 2057622 (-) True G108948
TU136170 lncRNA downstream 464478 1885965 ~ 1886276 (-) True G108834
TU136528 lncRNA upstream 38511 2394749 ~ 2397990 (-) True G109099
TU136566 lncRNA upstream 226381 2582619 ~ 2585989 (-) True AMCG00006344
TU136621 lncRNA upstream 462231 2818469 ~ 2832329 (-) True G109163
TU136636 lncRNA upstream 532248 2888486 ~ 2891893 (-) False AMCG00006354
TU136638 lncRNA upstream 536656 2892894 ~ 2894534 (-) False AMCG00006354
AMCG00006328 mRNA downstream 20945 2324505 ~ 2329809 (-) False AMCG00006328
AMCG00006329 mRNA downstream 50230 2278147 ~ 2300524 (-) True AMCG00006329
AMCG00006326 mRNA downstream 95838 2218031 ~ 2254916 (-) True AMCG00006326
AMCG00006325 mRNA downstream 141870 2206607 ~ 2208884 (-) True AMCG00006325
AMCG00006319 mRNA downstream 210597 2136824 ~ 2140157 (-) True AMCG00006319
AMCG00006331 mRNA upstream 47317 2403555 ~ 2413961 (-) True AMCG00006331
AMCG00006332 mRNA upstream 184032 2540270 ~ 2550180 (-) True AMCG00006332
AMCG00006333 mRNA upstream 202637 2558875 ~ 2561435 (-) True AMCG00006333
AMCG00006340 mRNA upstream 219423 2575661 ~ 2579656 (-) True AMCG00006340
AMCG00006344 mRNA upstream 225099 2581337 ~ 2586846 (-) False AMCG00006344
TU136502 other downstream 20763 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 220499 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 326611 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 468917 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 625906 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 1808696 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3657866 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4429075 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4722151 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 6366150 8722388 ~ 8724352 (-) True G110507

Expression Profile