RNA id: TU136528


Basic Information

Item Value
RNA id TU136528
length 2893
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G109099
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 2394749 ~ 2397990 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTCTCTTCAATGACAGTTTGTCGTGtctttaatactaataatttcaTATCCTATTCTTAAATTCAAGTCTGCCTGTTGGCCCttattgcaatattattttattaaactgtttaCATATGGTACAATCTCTATTAAAattagataaaaaaataaaaaaataaaacatgtaggGCTTATTACGTCGGTTTTCTACCCCTGCCTGATGATCCGTTTATTTGCTCCCTTTCTCAGCAATACAAACAGGGTCCAGAGACTCAGGAGACGCAGAAAAGAGAGGCCAGCAGAGCGGGAGAGGCGAAAGAGGAGTGCAGGAGGAAGATGGAGGCCTGAATTACGCCACTTTAGACATCCGCAAAGATTCCAAACGCAAGAGACCGGAAGTGCTGAACAAACACACGTGTACTTACTCTGAAATTAATCACGGTACCACACCGTAAGGGCATTCAGGTGTTTGATCTTCGGACTGACTGCCAAAACGCCCACCTGTTTCTCTGAATGACGTTTGGATTTCCCAATGCTTTCAGGCGTAATCAATCCTTTATTGAAAGTGGTGAGCTACAAAAGCCTCTCTGTATGGCCAGGGCTGGAGATCCACGAGGTACTGTCAGATAGCCACTGAATTAGCTCTGCAGGGAAGGATGCCTGTTTTAAGGGTTGTGCAGTTTGTCATGCAGTCTGTGGTTTTCTCCTGTCAAAAACGTGCGCTGCAGTGAACATTTCACTGAAGACatggggatgggggggacaAATGAAAGTACATGAAGCTCAGTTAGGGGCACCTCTTTTCACTAAACTATTTTACATAGTACAGTAGAGCAGAGggctccagccctggtcctggagaggtCCTGATCCTGTCACTGTATAACATTTGTAAATCTAAAAGAAGAAACACCACCATGGAGATTCCCAGCTGGAGATGTATTTCTCAGTGCCAGTGCTGGTAACaaatctcactctctcagtgcAGCACGGTCTCTCACACATGCAGTGCACGTGACATGACTCGGGGCTGTCTGTCAGCCAGAATACTTAGTAAGAGGCTTTTATTTCAGTGGTTTTgtgaaatccccccccccccaccaggccCTGAAAAGAGAGTGCAGTTAACATTGAGACACTGCCACCTGCTGTTGAAACTAATATtgattttctaatttattaaaGCAGACTTGTATTTGTATCTTAGTGAGTTGCAAGTTTTAGTGTGTTGTTCAGTATCTTGTTCTTTCATATCGCACTGTTTGTGGAATTCATTATTACAATAATGTCAAGTTAATGTCCTGTAACAACTAATTAAACAGAATAATGTTTAGTACTGTACTTCAAATAGCCACTAGGTGGACCCAAAGACTTACAGATGAATGCAACCTTCATCATCATTAATGCTtaataaaaacctaaacaaGTTATTAACTTAAGGTTGAAATTCTTAATGATTGCAGATCAGCTCCTAAAGGTTTAAACAAGATGATGGTGAGTGTAACAgagcatatatatacaccgatcagccataacatcatgaccacctgcctaatattgtgtaggtcccccttttgccaccaaaacagccctgacccgtcaaggcatgaaggtgtgctgtggtatctggcaccaagtcgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggactgtttgtccagcacatcccacaaatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccatggtccagttctgatgctcacgtgcccattatggacaggggtcagcatgggcacccagactggtctgcggctacacagtcccatacacaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttgagctacagtagctcatctgttggatcggaccacacgggccagccttcactccccacgtgcatcagtgagccttggccgcccatgaccctgtcgccggttcaccgcttttccttccttggaccacctTTGATagttactgaccactgcagactgggaacagcccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatgtggcccttgtcaaagtcgctcagatccttatgctgcccatttttcctgcttctaacacatcaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcatttcacctgtcagtgctcataatgtaaTGGCGGATTGGTATAATGTTAGTTTCAGATAAAGCATACTTgacgcgcacacacactgaaatataGTGAATGAAAACATCTAGACCTCATAGCTacgtatacacacacagttacaccaACCATCTGTTAGTGACATGATTCTTGACCATAAAAGCCCCCCAGAGTTACGGAGTCATTTAGTGGGTCTGCAGTGTTATGCGATTAGTGTGAGTGAGTCAGCAGAGCAGGAAGGCAATGATGAAGCAGAGCAGATGGGCCAGTGGGCTCCCAGCAGCCCCCAGCCAGCGGGTGTCACAGACTGGGATGCCATCAGTGTCACACAGTCAGCCAGTGAGCTGTGCATAACATGGACTGTATTTACTCTCACACTATTAATCCTCACAGTGAAGGCTTTCCATTTCCCCAGGTCCCTGTGTAACCCTGTCACCTTGCTCACAAAGAGATGAACATTTAGTCTTCATTTTCCACAGCAGTGTAGTGATGGCTATGAGGACCAGGGTGAGGATCACTATCAGAGCGATGGCCCATCCTGCAAGGCCAC

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136514 lncRNA downstream 4197 2346522 ~ 2390552 (-) True G109090
TU136517 lncRNA downstream 38511 2350754 ~ 2356238 (-) True G109091
TU136519 lncRNA downstream 38511 2350754 ~ 2356238 (-) False G109091
TU136520 lncRNA downstream 38511 2350754 ~ 2356238 (-) False G109091
TU136289 lncRNA downstream 264494 2097818 ~ 2130255 (-) False G108938
TU136566 lncRNA upstream 184629 2582619 ~ 2585989 (-) True AMCG00006344
TU136621 lncRNA upstream 420479 2818469 ~ 2832329 (-) True G109163
TU136636 lncRNA upstream 490496 2888486 ~ 2891893 (-) False AMCG00006354
TU136638 lncRNA upstream 494904 2892894 ~ 2894534 (-) False AMCG00006354
TU136816 lncRNA upstream 888280 3286270 ~ 3287229 (-) True G109294
AMCG00006328 mRNA downstream 64940 2324505 ~ 2329809 (-) False AMCG00006328
AMCG00006329 mRNA downstream 94225 2278147 ~ 2300524 (-) True AMCG00006329
AMCG00006326 mRNA downstream 139833 2218031 ~ 2254916 (-) True AMCG00006326
AMCG00006325 mRNA downstream 185865 2206607 ~ 2208884 (-) True AMCG00006325
AMCG00006319 mRNA downstream 254592 2136824 ~ 2140157 (-) True AMCG00006319
AMCG00006331 mRNA upstream 5565 2403555 ~ 2413961 (-) True AMCG00006331
AMCG00006332 mRNA upstream 142280 2540270 ~ 2550180 (-) True AMCG00006332
AMCG00006333 mRNA upstream 160885 2558875 ~ 2561435 (-) True AMCG00006333
AMCG00006340 mRNA upstream 177671 2575661 ~ 2579656 (-) True AMCG00006340
AMCG00006344 mRNA upstream 183347 2581337 ~ 2586846 (-) False AMCG00006344
TU136502 other downstream 64758 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 264494 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 370606 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 512912 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 669901 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 1766944 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 3616114 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 4387323 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 4680399 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 6324398 8722388 ~ 8724352 (-) True G110507

Expression Profile