RNA id: TU136755


Basic Information

Item Value
RNA id TU136755
length 305
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G109260
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3234905 ~ 3236401 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGATTTATTGCAATTCGGAGGAACACTTCCTCTCTGCCACCTGATTCTGTCCTCTGGGATTTTGTCCATTCTTCCTCATGTCCATGGGCCATCAGTAGACACACCGAACCCAAGCCACTGCTTCCCACTCATTAAAGCAATGGAAGACGTCACCAAGGCTCTGGACAGAAAGTGAGATGCATATTTACACACAGGATTGTGGGATTGGGTTGTGGAAGTTGCTTCACTGAGATACCTCAACCAGCAGCTTGATGAGCTTCCAGGCCAGGAATATTCTGCTCCAAATGGATTTTGTAACTTTC

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136688 lncRNA upstream 165677 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA upstream 165677 3066362 ~ 3069228 (+) True G109218
TU136687 lncRNA upstream 206259 3004856 ~ 3028646 (+) True G109217
TU136405 lncRNA upstream 716371 2436058 ~ 2518534 (+) False G109011
TU136404 lncRNA upstream 782076 2436058 ~ 2452829 (+) True G109011
TU136762 lncRNA downstream 11468 3247869 ~ 3252080 (+) False AMCG00006366
TU136782 lncRNA downstream 46735 3283136 ~ 3286179 (+) True AMCG00006368
TU136826 lncRNA downstream 103688 3340089 ~ 3393931 (+) True G109301
TU136838 lncRNA downstream 124953 3361354 ~ 3363115 (+) True G109309
TU136937 lncRNA downstream 312213 3548614 ~ 3548988 (+) True G109389
AMCG00006367 mRNA upstream 1928 3220219 ~ 3232977 (+) True AMCG00006367
AMCG00006364 mRNA upstream 57366 3151072 ~ 3177539 (+) True AMCG00006364
AMCG00006360 mRNA upstream 123330 3094082 ~ 3111575 (+) True AMCG00006360
AMCG00006359 mRNA upstream 233615 2989143 ~ 3001290 (+) True AMCG00006359
AMCG00006353 mRNA upstream 274373 2955335 ~ 2960532 (+) True AMCG00006353
AMCG00006366 mRNA downstream 6536 3242937 ~ 3251497 (+) True AMCG00006366
AMCG00006368 mRNA downstream 38381 3274782 ~ 3285081 (+) False AMCG00006368
AMCG00006370 mRNA downstream 56342 3292743 ~ 3301359 (+) True AMCG00006370
AMCG00006373 mRNA downstream 106138 3342539 ~ 3349221 (+) True AMCG00006373
AMCG00006369 mRNA downstream 115804 3352205 ~ 3354806 (+) True AMCG00006369
TU135896 other upstream 1422230 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 1495638 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1804918 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 1948853 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 2244083 985873 ~ 990822 (+) False AMCG00006256
TU136837 other downstream 124953 3361354 ~ 3365565 (+) False G109309
TU136897 other downstream 266780 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 333638 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 362840 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 401342 3637743 ~ 3640661 (+) False AMCG00006387

Expression Profile