RNA id: TU136816


Basic Information

Item Value
RNA id TU136816
length 960
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G109294
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3286270 ~ 3287229 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGTTCAAAATACttagtttaataatttaatcaaaataacacaaaagatTCCTCCACAAATATTCCtgtcaaacacaaaataatggggacataaaaataaacatccttGAGGTCCACTGTGTTGAACCAGTAGGGAGGTCTGATGGACTGGATAGTAGTACAATGCGTGATCATCTTAAACCACAGTTCTTTCAGATAGCAGCTCAAGGCTCTCAGAtccaccatctttcttgggcaccaGGAAGCATTGCAATAAAACCCCTCTCACACCCAACAGCTCTGGAGACGGGCTCTTTCCATGTGGCTTGGAAATCCTGCACACTGGCTGCTGAGGGCATTGTCGCCTCccctcgggggggggggggaaactcattttcttacaaatatttcccaacataaaaccaatgtcacacAGAACAAAATTGCAATGTTCCATTTTTAATTCAGcaatatgagagaattggtcaggggtctgaatacttttgcaaggcactgcaTACATAGTACTATAATTGTAATAGATCAAAAATAGGACCTCAGGACCAAACTGCCACATGAGGGGCACAGGAGGGAATCAGGAAGCAACAGAGCACATCAGCTGTCCtgttcaaaacattgtaaaaggaTGTGggcatttctttaaatactgttttcaaGGGGATGTGGGGTTGGGtttgtgttaaaacattgtTCACAGGCTTTCATTCAGACATCTGAGGCCGCTGTGTGTTTCAACACTTCACAATTAGCCATGAAACAACAGGAGCTCCAGTCAgtctgcactgtgctgtacataTTTTGATGTCTTTATACAATCACAAGGTGTTACATATGAGAGATATGAGAGAATATCTACAGTCCTGTCAAAAACTACTGTTCACAGCAGTTCATTTATCCAGTTAAACTACGAACCACTTGAGAGAATACAATACAcctgaaaagtaaattaaaacatgtaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136638 lncRNA downstream 391736 2892894 ~ 2894534 (-) False AMCG00006354
TU136636 lncRNA downstream 394377 2888486 ~ 2891893 (-) False AMCG00006354
TU136621 lncRNA downstream 453941 2818469 ~ 2832329 (-) True G109163
TU136566 lncRNA downstream 700281 2582619 ~ 2585989 (-) True AMCG00006344
TU136528 lncRNA downstream 888280 2394749 ~ 2397990 (-) True G109099
TU136854 lncRNA upstream 52889 3340118 ~ 3433270 (-) True G109322
TU136866 lncRNA upstream 79968 3367197 ~ 3369548 (-) True G109334
TU137003 lncRNA upstream 261385 3548614 ~ 3561944 (-) True G109432
TU137017 lncRNA upstream 299367 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA upstream 299367 3586596 ~ 3655123 (-) True G109439
AMCG00006365 mRNA downstream 82383 3178729 ~ 3203887 (-) True AMCG00006365
AMCG00006362 mRNA downstream 146735 3137907 ~ 3139535 (-) True AMCG00006362
AMCG00006363 mRNA downstream 162070 3120277 ~ 3124200 (-) True AMCG00006363
AMCG00006361 mRNA downstream 168595 3112543 ~ 3117675 (-) True AMCG00006361
AMCG00006356 mRNA downstream 303463 2974697 ~ 2982807 (-) True AMCG00006356
AMCG00006372 mRNA upstream 42127 3329356 ~ 3336253 (-) True AMCG00006372
AMCG00006371 mRNA upstream 69566 3356795 ~ 3361837 (-) True AMCG00006371
AMCG00006376 mRNA upstream 152282 3439511 ~ 3452179 (-) True AMCG00006376
AMCG00006377 mRNA upstream 188762 3475991 ~ 3479508 (-) True AMCG00006377
AMCG00006380 mRNA upstream 219082 3506311 ~ 3515208 (-) True AMCG00006380
TU136502 other downstream 956279 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1156015 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1262127 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1404433 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 1561422 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 877705 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2726875 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3498084 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3791160 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 5435159 8722388 ~ 8724352 (-) True G110507

Expression Profile