RNA id: TU136837



Basic Information


Item Value
RNA id TU136837
length 813
RNA type TUCP
GC content 0.48
exon number 3
gene id G109309
representative False

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3361354 ~ 3365565 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aataaaaccattttaaggTTCACCGCTTTGATGGTCTGGACCGCTTGATTGGCTTCTACTAGATTTCGTCTGGTCgcttgaaaataaaaccccatAACGTGCATTTCCgtttcctcttcctctgctcTATATTGTGATGGCATCGGTAGTAAAATTACCACTGCACAGCCAGCAATACCGGGGAAATAACGGAGAACTTACCGACAAGAGGTTTGCACCGACGAGCGGGATTAGAAGTAACAAGGCGACAACACCGCAAAGACCGGCCGCCCAAGCTCGGCCACTAACCCTGCAGGAGCCGGTCCACTGTGCGCTGCCCATCTCTGCGGAGCAACTACCGCAAAAAACATAGAAAACGTGCCACCGAGACGCTTTTTAAGACTGACGGGCCACAGTCATGGAGCGGAGAGTATCTCTCATCCTGCTGTTCTCAGGGCTCTGCAGTCTCTCCTCATGTCTCGCTCGTCAGTATGTCTTAGTGAACACACCTCTGGGCTGGAGTGACGCACAACAATactgcagagagaaacacactgacCTGGCCTCCATTGACAATGCAGAAGAACTGGACAGGCTGCTAAACAGTGCAGGCAGGACTGATAAACTCCAAGCATGGATAGGACTGTACAATGGCATCAGCAATTGGAACTGGTCTCTAAAGCAAAATGACTACTATAATGTGGAGTATTACAATTGGAGATCAGGACAACCAGACAACTTTTATGGTGCAGAGTACTGTATCGAAATGAACCCTTCTGGTACATGGAATGATTTCCAGTGCTCCGGGAAGAAGTACTTCATTTGTTATCAAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU136782 lncRNA upstream 75175 3283136 ~ 3286179 (+) True AMCG00006368
TU136762 lncRNA upstream 109274 3247869 ~ 3252080 (+) False AMCG00006366
TU136755 lncRNA upstream 124953 3234905 ~ 3236401 (+) True G109260
TU136688 lncRNA upstream 292126 3016779 ~ 3069228 (+) False G109218
TU136689 lncRNA upstream 292126 3066362 ~ 3069228 (+) True G109218
TU136937 lncRNA downstream 183049 3548614 ~ 3548988 (+) True G109389
TU136956 lncRNA downstream 209145 3574710 ~ 3576156 (+) False AMCG00006379
TU136939 lncRNA downstream 252681 3618246 ~ 3621796 (+) False AMCG00006379
TU136971 lncRNA downstream 333543 3699108 ~ 3714779 (+) True G109405
TU136954 lncRNA downstream 356954 3722519 ~ 3755041 (+) True G109392
AMCG00006369 mRNA upstream 6548 3352205 ~ 3354806 (+) True AMCG00006369
AMCG00006373 mRNA upstream 12133 3342539 ~ 3349221 (+) True AMCG00006373
AMCG00006370 mRNA upstream 59995 3292743 ~ 3301359 (+) True AMCG00006370
AMCG00006368 mRNA upstream 76273 3274782 ~ 3285081 (+) False AMCG00006368
AMCG00006366 mRNA upstream 109857 3242937 ~ 3251497 (+) True AMCG00006366
AMCG00006375 mRNA downstream 53750 3419315 ~ 3421518 (+) True AMCG00006375
AMCG00006374 mRNA downstream 60860 3426425 ~ 3428561 (+) True AMCG00006374
AMCG00006378 mRNA downstream 176153 3541718 ~ 3552354 (+) True AMCG00006378
AMCG00006379 mRNA downstream 206532 3572097 ~ 3575328 (+) True AMCG00006379
AMCG00006383 mRNA downstream 219890 3585455 ~ 3596853 (+) True AMCG00006383
TU135896 other upstream 1548679 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 1622087 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 1931367 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 2075302 1280701 ~ 1286052 (+) True AMCG00006276
TU135722 other upstream 2370532 985873 ~ 990822 (+) False AMCG00006256
TU136897 other downstream 137616 3503181 ~ 3506679 (+) True G109362
TU136948 other downstream 204474 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 233676 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 272178 3637743 ~ 3640661 (+) False AMCG00006387
TU137096 other downstream 493708 3859273 ~ 3863270 (+) True AMCG00006393

Expression Profile