RNA id: TU136897


Basic Information

Item Value
RNA id TU136897
length 3471
RNA type TUCP
GC content 0.48
exon number 2
gene id G109362
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3503181 ~ 3506679 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCATGggtatgcattttgtttttttttggttttctcgccagtatattaaatacaatattcacaCAAGTCTACTTCAGACAGGGGGTCTGTACAGAAATCACAAGgaagagagggatgggggggagggatataggagagagtgagagagaacaGTGGGGAGAGAAAGATAATGACAGGGAAGGAGAGTCAGAGGGGGgtgcagagaggagagggagggaggaaaggagggggcagagagggtgggagaagaggagaggagagcagtGAGAGTAGGAAAgaagagagggatagagaggacagagggaagagggaaggagagatggAAGAAAGGATAGAGAAAGGGAATGAAAAGGAGAGAGGTGCAAAGGAGGATGAGAGCAGGAAgcagggaaggagaggaggaagagagataTGGATGGAAGGAgggaatgagggagagagaaagaggcaggGGGAGCAGCAAAAAAGATATAGAGTgacagcaagagagagggaagggatgTTACAgattggatggatggatggatggatatagatagatagtcGCAGAGGAATAGCTCAGACATGGTGCTCTATAGAAGGAGCCTATTGTGGTACAGGGTGCAAAACAAACTTCATTTACACCAGCAGTCTGTCAGCTCATCTATGTCCATCTGTCTCTAACattgtctgtcagtcagtcttgGAGTTGTGTTTACATGCGTGTGTGCGAggccgtctgtctgtctgactgactgactgacagacggtcagtcagtcagtcagtagtGGGACAGGTCCAGTCCGGTCAGACCCAGCCCAGCAGTCAGCACTGTGTTCCCTCCAGCACGGTAGAGGCTAGACCACAcgctgctctccctctccctccgtTTCTCTCCAGAGCGCGAGAGGGTCCACACTGCACATTCACAGATCCACATTCACATTCTAACAGGGGAGGCGGGGGGgattttttaaagcatcatAGCACCTTAAACCGAGAGCATGGTGCGCACAAGCAGCGGATTACACACGTATGTGCATCTTATACTGACACGGGCCCCCAAAACCACAGCGTTCATCTCTGCGTTACGAATCAGACgcatgcagtaaataaataaataataaataaataaataaataaataaaataatccccCCGACTACGTCCCGGATTTCAAACGCCAGCTAGATCTGAGAACACCAGTATAATGATCTtccaatttatgtatttatttattcatttctttatttcggGGTTTTAATTAATCCCAGGCCATCGTTAGAACACGGCAGAGGCAAACCTCCCCCCCCCGTCCACACCCCAGTTCCCTAGGCAACTAATTAATTGGGTCTGGAAACTCCGCAAAGAGCTAAGGACTCTCAATCGCCACAGCAGCATGTCTTGTAGGGTCCGGTTTATATTCACTGAACTATACTATACAGTACAGCAAAGGCATGGCACAGTACTGGAATATACTGCACCGTATACTGTATTGTCTTGTATTGTACTCGACTGTGTTCTACTGTATAATACTGCACTGTGCGGTATCGTGCCGTACCCCAGTCCCTGCCTTCTCAactgctgtgctgtactatgCGATCCTGTACTGAACCCCCCTACACCATGACTCTTGCCCCGTGCAGCCACGCACTTCCCAGTCAGTTTATAATGccctcatgttttttttcccttctttaatGTGAGCTGCCTCGGATAACAGCAtcagacaaataaattaaaaacaataaaacaaatacaatcataaaaaatattaaaataaaacctgttaatgataataataataataataataataataatgtcaggCTAGCTCAGTAAATCGCACTGAAAGCACAATAAAGACATTGAGCATCCACAGACAGCCAGGGACATTAGTGTAAAACGCAGCAAAAAACACACCTTCATAACTTGGATCAGAATGGGGGTCTGTGCGTAATGCCTCTGTATACCTCCGGAGCTCCTCCCTCCCTTCACTCACAGTTTCCAGCCCGGGTCAGACCCAGCAGCACCCCCGGACCCAGGCCAACCCGCTCTATCCGGGTTGGGGGGTCTGGGTGAAGGGGGCAAAAGTTAATGAGCGCTTCACACATTAGATCGTTTATCTACTCCATCAGAACCCACTGGCAGTGTGGGTtcgtcattgttgttgttgttattattattataataaagtgACCCATGACAGCAAAATTAGTTGCAAGTTGCACGAGTtcgcaaataaataatttgcagtcAAAGCAGAAAACGGTCAAGAGGCCTAAACTGTTCTCAAAttagttttggaaaaaaatcaGTTTTAGAGACTTGACCTGAACTGAGTATTTACATAACTGAAACTGAATCTTTGTACAAAAACAAGCACTACGTCAGCAGTTCCCCAACATCCCCCGGGCCTCAATGGAGCTGAAACGCTGCCAAAAAGCCATCAAACTCAGAGTGCACTTTTCAGCCGCTCCCTCTCGGGGACCCCCGTCACAGCCCCTCCAGGAAAAGTGCGGAATTCcctcatttacaaaacaattggACAATGAGAGCGCAGGAAGCAAGGCGGGCCGGACCCGGGCCATGGGACTCCTGTTGCAGTCCTGggtcacattattattatgattatgatttctGAACAGAACGAATGTGAGATTTTGAGTCCGCGGTACTAAAATCAGAAGAGCCAGCCAGACACCCCTGTCCACTCGGACCCAGGACACCGCGTGAACTGAACTGGAGTCAACTGGTAATGACGGTACAGGCAGGAACTCCAATCTTGCACATTATTAACAGATTATATACACATccatatacatattcatattatcCCTTCACCTCCCTGTCCcatcccctctccctctgtctctctcgttCTACCGGCGCAGTTCAAGCGTGCCATATTGTTCAGGTCATCACTGTCTGTATCAGAAACCCTTGTGCTGCCGGGCGTTAAGGTACTGTAGTGCCTGCGCAGTCAGCTAGTCTGtatcaagagagagagacagtctcTGTACACTACCTCCTTCCACCAGTGTGTACAATATTAATTCCTACAGAGTCATTAACTCAGTGTCTGTACGACACCACTGGTCCATTCAGAGACAGGCAGGGAGACTAAGAGGTGGCGTCCTCACAATATCGCAGAGggacggacggacagacagagaggtgCGGAGACGGTCTGCGCAGCGTCAGTCCGATTGAGGTGATGTCTGTAAAATGCCTTGTTTGGAGACAGAGGAACAGACACGGAGGAGACGGTGTCAAACACGGACGGAAACAAAGTGCCTGTACAATGCCGTTAATtaatcaagagagagagagaggagagagagcgagagagggggtCAGCGTCTGTATGTgggggacacacagacacagtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgttgTCCCCTCACAAGCTCACACTGCGGTGGTGTTTGAGATACACCGTGgacctcctctccctcctctgccCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136826 lncRNA upstream 109250 3340089 ~ 3393931 (+) True G109301
TU136838 lncRNA upstream 140066 3361354 ~ 3363115 (+) True G109309
TU136782 lncRNA upstream 217002 3283136 ~ 3286179 (+) True AMCG00006368
TU136762 lncRNA upstream 251101 3247869 ~ 3252080 (+) False AMCG00006366
TU136755 lncRNA upstream 266780 3234905 ~ 3236401 (+) True G109260
TU136937 lncRNA downstream 41935 3548614 ~ 3548988 (+) True G109389
TU136956 lncRNA downstream 68031 3574710 ~ 3576156 (+) False AMCG00006379
TU136939 lncRNA downstream 111567 3618246 ~ 3621796 (+) False AMCG00006379
TU136971 lncRNA downstream 192429 3699108 ~ 3714779 (+) True G109405
TU136954 lncRNA downstream 215840 3722519 ~ 3755041 (+) True G109392
AMCG00006374 mRNA upstream 74620 3426425 ~ 3428561 (+) True AMCG00006374
AMCG00006375 mRNA upstream 81663 3419315 ~ 3421518 (+) True AMCG00006375
AMCG00006369 mRNA upstream 148375 3352205 ~ 3354806 (+) True AMCG00006369
AMCG00006373 mRNA upstream 153960 3342539 ~ 3349221 (+) True AMCG00006373
AMCG00006370 mRNA upstream 201822 3292743 ~ 3301359 (+) True AMCG00006370
AMCG00006378 mRNA downstream 35039 3541718 ~ 3552354 (+) True AMCG00006378
AMCG00006379 mRNA downstream 65418 3572097 ~ 3575328 (+) True AMCG00006379
AMCG00006383 mRNA downstream 78776 3585455 ~ 3596853 (+) True AMCG00006383
AMCG00006385 mRNA downstream 92574 3599253 ~ 3612758 (+) True AMCG00006385
AMCG00006384 mRNA downstream 117268 3623947 ~ 3632121 (+) True AMCG00006384
TU136837 other upstream 137616 3361354 ~ 3365565 (+) False G109309
TU135896 other upstream 1690506 1808557 ~ 1812675 (+) False G108626
TU135921 other upstream 1763914 1735932 ~ 1739267 (+) True AMCG00006294
TU135836 other upstream 2073194 1350383 ~ 1429987 (+) True G108585
TU135810 other upstream 2217129 1280701 ~ 1286052 (+) True AMCG00006276
TU136948 other downstream 63360 3570039 ~ 3573709 (+) False AMCG00006379
TU136955 other downstream 92562 3599241 ~ 3599697 (+) False AMCG00006385
TU136960 other downstream 131064 3637743 ~ 3640661 (+) False AMCG00006387
TU137096 other downstream 352594 3859273 ~ 3863270 (+) True AMCG00006393
TU137156 other downstream 456918 3963597 ~ 3963996 (+) True G109538

Expression Profile