RNA id: TU136961


Basic Information

Item Value
RNA id TU136961
length 1718
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G109396
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3772549 ~ 3774544 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTGCCTCCTGCTCTCCGGCTGTCTCTGCTGCCTCTGGAGCAGGAGAGgtGGTGTTCAGTGTGTTGGAAGGAGTGAAGGAGCAGTGCAGGCAAACGATGTGTGGTCAGTTTATGCCAATGCAGAAATGCACACAGACCCTAACTGCACCCTGACGAGACGAGCTGCAGAGGAGCGCTCGGTGTATGTTCTCCAGGGTGGGCCGGAACCGGAATTTTAAATACTACTTTGTAGATATTCAAATGTGCCTTTAAATACCATcagcattattttcaaaaaggaTTGTTTGATCATTTTTTAAAGACTAATTTATGTAACCAAATCTCATCTGTTTGTAAGAGTGCAGGAAAACGGACCCTGGGCACATTTTACAGGCTCTTCTAAGGAACCGTATGAAGTGACCCCAGATCAGGTTGCAGACACTTCCTTGCAATTCGTTTCTGTCAAGGGTGTGATAACAACTCCACTAACTAACAGGATGGTACTGGTGGTTTCCTGTTCACTGAATAGCCCTTGTTCAAATCCCCTGCACTCTTTATTTAGAACCATTTCCTTGACATTTTATATGACTACAATTGATTCTTAAGGCCCTAATTGTGTAACTTATCAAAAATAGAAGTTGGTCGCAGAGATGTGTGAAATGCctgtatgtaatttaatttatgttttaaaggtgcagaaatgtgaatattttgttgtatccttatactgaaatatatattaaattaagaaaatcagGTTTTATAAATTGAAATAGAAATAGCATTTCAACCAGCCTCATTTCATCCTAACTTTTCGAAAATCATGTTGATATTagttgaaagaatgaaaaaaaagcttttaactaAACAGATActgtatctttttatttgttagcTGGGAGATAGAAAGCAAATTTGCATGTGCAGAAAAGGTATTACAGACAGTATGCAGTTATTAGGTGTTTATTAATGGTGTCTACTAACATGTATGAATGCAACAGAAATGGTTGTACTTGTAAGTATGCATTAACCAGACATAAAGCAGTAACTCTATTGTGTGACATTTCACcccatttaataatataaaactcaatatacaacaataaatatatacaaggaaagaaacaaaatcaaaagtataaCAAATCGAATCTTACATcaagtgtatataaatatgggGTAATGTAAGTGGATAGTGCAAATACACAGATGTGCAAatgagcaaataaataatacactgtatatatacactgatcaaaGTGTCCGTGGGTTATTGTCAgcgctgttgttgctgtgctgtGGTCAGTGAGGGTGCTGGTCCTTGGCAGCGTCCGCATTACGGATCTGGGTGGCTTGGGGGTATTATTGCTCCCGAGACTCTCTGTGTTCACCTTGGAGCTGCTGTAGCATTTCCTGAGCGCAGCAGTGGGGTGCACTTCCCAACCTGCAGGACATCTGCACCAGAAGGAGCAGGACTGATGCCAGGAGAATCATTAAGGATCCCAGCCACCCGTACAATGGGCTCCTCCTGGTGCAGATATCCTGCAGGTTGGAAAGTGCACCCCAGGTGGTGCTCTCAGCCAACCGCACCCCTCCGTGCAGGGTCTTCAGTCCTCAGTATCTCGGGGCCATCCTAGACTTTCCAGACGTCTGAGGTGATGGAGGCGTTCCGTGTCGAGTCCTGTGTGCTGTGAACGCTGAGGTGCTCACCCTCTCCTCTGGGCCCCCACTGATCCTG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04612 Antigen processing and presentation
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136954 lncRNA upstream 17508 3722519 ~ 3755041 (+) True G109392
TU136981 lncRNA upstream 41709 3729887 ~ 3730840 (+) True G109412
TU136971 lncRNA upstream 57770 3699108 ~ 3714779 (+) True G109405
TU136939 lncRNA upstream 150753 3618246 ~ 3621796 (+) False AMCG00006379
TU136956 lncRNA upstream 196393 3574710 ~ 3576156 (+) False AMCG00006379
TU137110 lncRNA downstream 89941 3864485 ~ 3864732 (+) False AMCG00006393
TU137140 lncRNA downstream 135417 3909961 ~ 3911048 (+) True G109523
TU137147 lncRNA downstream 161436 3935980 ~ 3936902 (+) True G109530
TU137149 lncRNA downstream 169225 3943769 ~ 3943994 (+) True G109532
TU137159 lncRNA downstream 202184 3976728 ~ 4035308 (+) True G109541
AMCG00006389 mRNA upstream 8921 3749003 ~ 3763628 (+) True AMCG00006389
AMCG00006386 mRNA upstream 103618 3653239 ~ 3668931 (+) True AMCG00006386
AMCG00006387 mRNA upstream 123638 3638162 ~ 3648911 (+) True AMCG00006387
AMCG00006384 mRNA upstream 140428 3623947 ~ 3632121 (+) True AMCG00006384
AMCG00006385 mRNA upstream 159791 3599253 ~ 3612758 (+) True AMCG00006385
AMCG00006392 mRNA downstream 40069 3814613 ~ 3819824 (+) True AMCG00006392
AMCG00006396 mRNA downstream 49027 3823571 ~ 3824069 (+) True AMCG00006396
AMCG00006394 mRNA downstream 51024 3825568 ~ 3826749 (+) True AMCG00006394
AMCG00006395 mRNA downstream 57717 3832261 ~ 3839998 (+) True AMCG00006395
AMCG00006393 mRNA downstream 84390 3858934 ~ 3864544 (+) False AMCG00006393
TU136960 other upstream 131888 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 172852 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 198840 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 265870 3503181 ~ 3506679 (+) True G109362
TU136837 other upstream 406984 3361354 ~ 3365565 (+) False G109309
TU137096 other downstream 84729 3859273 ~ 3863270 (+) True AMCG00006393
TU137156 other downstream 189053 3963597 ~ 3963996 (+) True G109538
TU137199 other downstream 378272 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 384979 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 702390 4476934 ~ 4477570 (+) True G109714

Expression Profile