RNA id: TU137003


Basic Information

Item Value
RNA id TU137003
length 470
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G109432
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3548614 ~ 3561944 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCCTTATACGATGAGGTCTCctcataaataacaatacaacaaGGAATCACAACATCACTTCTCTCCCCACAACAGTCTGTCCCAATGATGCCCTACACAACTGGAAGAGGCTCTTCTGCACACCAAACCCAGGTCCTGTAAAGCTGGAGACAAAATGCAGTAAGAAAAGTGTACATTAATCATCCCCCTAGCGTGGGATCCATCTGAAGACCCAGGACGAATCCTCGGCTGAGGATCAAGGCATCGATCTCCAAGCACCAGAGACTCGTGGATCAGATTTTCCCTGGGAATCATGCTTCAGTGGATTGTCCTGGCTGGAGTTATGACTGGAGGCAAGGNNgtctcctcagATCCTGTCACAGTGTCAGTGAGAGTCGGGGACTCTGTCACTCTGCCCTGTGTTGGATTAGCCTGCAGAGGGACTCCTATAGAGCAGCTCTACATTAAGTGGCAGACAGTGGATCAGGA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136854 lncRNA downstream 115344 3340118 ~ 3433270 (-) True G109322
TU136866 lncRNA downstream 179066 3367197 ~ 3369548 (-) True G109334
TU136816 lncRNA downstream 261385 3286270 ~ 3287229 (-) True G109294
TU136638 lncRNA downstream 654080 2892894 ~ 2894534 (-) False AMCG00006354
TU136636 lncRNA downstream 656721 2888486 ~ 2891893 (-) False AMCG00006354
TU137017 lncRNA upstream 24652 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA upstream 24652 3586596 ~ 3655123 (-) True G109439
TU137050 lncRNA upstream 136941 3698885 ~ 3714779 (-) False AMCG00006390
TU137060 lncRNA upstream 168098 3730042 ~ 3800123 (-) False AMCG00006398
TU137079 lncRNA upstream 243712 3805656 ~ 3807787 (-) True G109472
AMCG00006381 mRNA downstream 24595 3515708 ~ 3524019 (-) True AMCG00006381
AMCG00006380 mRNA downstream 33406 3506311 ~ 3515208 (-) True AMCG00006380
AMCG00006377 mRNA downstream 69106 3475991 ~ 3479508 (-) True AMCG00006377
AMCG00006376 mRNA downstream 96435 3439511 ~ 3452179 (-) True AMCG00006376
AMCG00006371 mRNA downstream 186777 3356795 ~ 3361837 (-) True AMCG00006371
AMCG00006382 mRNA upstream 2285 3564229 ~ 3565417 (-) True AMCG00006382
AMCG00006388 mRNA upstream 112886 3674830 ~ 3678417 (-) True AMCG00006388
AMCG00006390 mRNA upstream 151808 3713752 ~ 3728519 (-) True AMCG00006390
AMCG00006391 mRNA upstream 173347 3735291 ~ 3742281 (-) True AMCG00006391
AMCG00006401 mRNA upstream 214122 3776066 ~ 3778504 (-) True AMCG00006401
TU136502 other downstream 1218623 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1418359 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1524471 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1666777 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 1823766 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 602990 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2452160 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3223369 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3516445 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 5160444 8722388 ~ 8724352 (-) True G110507

Expression Profile