RNA id: TU137019


Basic Information

Item Value
RNA id TU137019
length 288
lncRNA type inter_gene
GC content 0.63
exon number 3
gene id G109439
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3586596 ~ 3655123 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTCACAGTGACGGCCACAGTGCTGATGGTCTTTCTGCTCTGGGAGTCCAGCACTGTGTAGGAGCCCTGGTCAGTGAAGGTCAGTGCAGACAGTGTGACCTCCTGCTCCTGCCCTGAGACTCGGGGCCCATAGGCAGGGTCAGGGGTCACGGTGCCGCCCTCTACAGCACACACTGGGAGAGAGGCTCCAGCGCCCGCAGGGTTAAACCGCACTGTCACAGCTGCCCTGCTGTACAGACGGAGGCTCAGGGGCTGCCCATAGGAGACAGAGCTGCTCTCCTCACGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137003 lncRNA downstream 24652 3548614 ~ 3561944 (-) True G109432
TU136854 lncRNA downstream 153326 3340118 ~ 3433270 (-) True G109322
TU136866 lncRNA downstream 217048 3367197 ~ 3369548 (-) True G109334
TU136816 lncRNA downstream 299367 3286270 ~ 3287229 (-) True G109294
TU136638 lncRNA downstream 692062 2892894 ~ 2894534 (-) False AMCG00006354
TU137050 lncRNA upstream 43762 3698885 ~ 3714779 (-) False AMCG00006390
TU137060 lncRNA upstream 74919 3730042 ~ 3800123 (-) False AMCG00006398
TU137079 lncRNA upstream 150533 3805656 ~ 3807787 (-) True G109472
TU137095 lncRNA upstream 171387 3826510 ~ 3834423 (-) True G109483
TU137130 lncRNA upstream 211597 3866720 ~ 3867041 (-) True G109514
AMCG00006382 mRNA downstream 21179 3564229 ~ 3565417 (-) True AMCG00006382
AMCG00006381 mRNA downstream 62577 3515708 ~ 3524019 (-) True AMCG00006381
AMCG00006380 mRNA downstream 71388 3506311 ~ 3515208 (-) True AMCG00006380
AMCG00006377 mRNA downstream 107088 3475991 ~ 3479508 (-) True AMCG00006377
AMCG00006376 mRNA downstream 134417 3439511 ~ 3452179 (-) True AMCG00006376
AMCG00006388 mRNA upstream 19707 3674830 ~ 3678417 (-) True AMCG00006388
AMCG00006390 mRNA upstream 58629 3713752 ~ 3728519 (-) True AMCG00006390
AMCG00006391 mRNA upstream 80168 3735291 ~ 3742281 (-) True AMCG00006391
AMCG00006401 mRNA upstream 120943 3776066 ~ 3778504 (-) True AMCG00006401
AMCG00006398 mRNA upstream 128519 3783642 ~ 3815517 (-) True AMCG00006398
TU136502 other downstream 1256605 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1456341 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1562453 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1704759 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 1861748 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 509811 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2358981 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 3130190 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3423266 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 5067265 8722388 ~ 8724352 (-) True G110507

Expression Profile