RNA id: TU137079


Basic Information

Item Value
RNA id TU137079
length 554
lncRNA type intronic
GC content 0.44
exon number 2
gene id G109472
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3805656 ~ 3807787 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGGGATGTCGGCAAGCTGTCTTCGTAATAGAAATtcacaaatatttacaGACTCATAAGAGGACAGGAAGATCAATGTTTCCAAAGATGGGCCTGTGAGTGCATCTGATACAGACCATCATGATCCCGGGAACAGAGAACCTGGAGGGGCTTGATGTACTACAGGCTTGTGCCTTGCTGAGGGGCCTGCTATATGCTCTGAATCTCCACAATCCAAAGAACTGAAGCATACCTTTTGAGGAATTTCAGAAGTTATGTCTGGAGTTGGACAGGCTGAATGCTAACCCTAAAGTGATGTTTCTTAACCACAAGCTGCTCTCCTCATAGAATTATTTAAGGTCATTGTTAATTTGTGcactgtttttgtaaatatatttttcagtggtGATATACCTGCAACTGTGAATGTGTGAGTGAATGTACACATATGCATGAGTGCTGTGAGTGGTGTTTGTGTGAGCACAGAGTTGAATGTGTTCGTATGTGCttgtgggagagggaggggtgtGTGGAGGTGTACAGAGGGATGCACTGGATAAAGGctataattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137060 lncRNA downstream 5533 3730042 ~ 3800123 (-) False AMCG00006398
TU137050 lncRNA downstream 90877 3698885 ~ 3714779 (-) False AMCG00006390
TU137017 lncRNA downstream 150533 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA downstream 150533 3586596 ~ 3655123 (-) True G109439
TU137003 lncRNA downstream 243712 3548614 ~ 3561944 (-) True G109432
TU137095 lncRNA upstream 18723 3826510 ~ 3834423 (-) True G109483
TU137130 lncRNA upstream 58933 3866720 ~ 3867041 (-) True G109514
TU137158 lncRNA upstream 168416 3976203 ~ 3976617 (-) True G109540
TU137245 lncRNA upstream 168922 3976709 ~ 4035331 (-) True G109609
TU137260 lncRNA upstream 274020 4081807 ~ 4083452 (-) True G109619
AMCG00006401 mRNA downstream 27152 3776066 ~ 3778504 (-) True AMCG00006401
AMCG00006391 mRNA downstream 63375 3735291 ~ 3742281 (-) True AMCG00006391
AMCG00006390 mRNA downstream 77137 3713752 ~ 3728519 (-) True AMCG00006390
AMCG00006388 mRNA downstream 127239 3674830 ~ 3678417 (-) True AMCG00006388
AMCG00006382 mRNA downstream 240239 3564229 ~ 3565417 (-) True AMCG00006382
AMCG00006399 mRNA upstream 15128 3822915 ~ 3823973 (-) True AMCG00006399
AMCG00006397 mRNA upstream 31261 3839048 ~ 3847723 (-) True AMCG00006397
AMCG00006400 mRNA upstream 40577 3848364 ~ 3858917 (-) True AMCG00006400
AMCG00006402 mRNA upstream 66163 3873950 ~ 3878042 (-) True AMCG00006402
AMCG00006407 mRNA upstream 232707 4040494 ~ 4043227 (-) True AMCG00006407
TU136502 other downstream 1475665 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1675401 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1781513 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1923819 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2080808 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 357147 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2206317 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2977526 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3270602 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4914601 8722388 ~ 8724352 (-) True G110507

Expression Profile