RNA id: TU137095


Basic Information

Item Value
RNA id TU137095
length 7252
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G109483
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3826510 ~ 3834423 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGTTGAACTCCAGCACGTCCAGCAGGTCGAACAGCTTGCGGTTCTTCTCGTTGTCCTTCAGCTTGACGTAGTACTGCTGCAGGCCGTGCAGGGTCAGCTTCGTCTCGTCGTCCACAAAGATCTCCATTGGCtgcagggaggggagggagggaaaagagagagggcCCAGGGTTAGAAATTCACCCTCCCCTCCCACCCCAGTGTCAACTCATCaactctacctctctctctaacacacactTTCAATCGCACTCGCTGTACAGACACAGCACTGTGGAATCCACAGGGCACACATCGCTgcaggcacacacactcacacaccagcTGTCTGTCAAAGGAACCCCCCCATTCCCTTCCAGGAACCTCGATTCTTGCCCCCCCCGTATCTACAGATACCTTGAAGGGAAGGGTAGAGAATTGTGTATGTGAGGGGGTCAATTTGAGAGAGAGCttatgtacacacaaacacacactcgaACACTGACACTCTGTGTAGCACTGAGCTATGGTTGATGGGGTGAGAGTTTGCtctgattgattgacagttctCGGGCTCTCCTCCAGCTCCACCCCGGGGAATTAACCAACTGGCTGTGTACCGTCAGAGCTGTTGAAGAGCTGCTGAACACAGCAGGGAACTGAGAAGAACAGTCAAAGACAATAGACCATGGTGGGGAAGACCTGAGCCAGGATCCCAATCAAGGCTAGGTTACTCTGCGACTGACACTCACTGAGCAACTGACACACCAACTGACTGATTGAATGATACCCTGATTGCCCAGAACATTGAGtgactgatgcactgactgacTCATTCCCTGACCATGTACCGGCTGAAGGATCTGATTAAAGTGCagaccagtcagtcagtgcgtaTCAGTGGCTATAATGTTCCTCTGCAGCAGCACACGTGTGTTCAGTAACAGTTCGACAGCTCCGCTCACCAGCCCCCTAAACCCCTCCTGCTCTGACTACCAGGAGCTTCTTATTTTGCATTCCCCTGCCACACTGTCTCCTGTGCACAAGGCAACATCTGGCTCCCCTGTCCCCAATGGTGGGCGCCACTGTGCGGTAGGTATCGTTATTTAGCAAGCTTGCTAAACCTGCTTGCTAAATAGGGATCCTAATTCCTTTCGCTACACTGACAGCTGCCCTGGCCAAATACGGAGACTCACTTGACCGCCCTGTTACAGCAGAGGGGGCACTGGCCTGCTAGATAAGGAGCCCTGCAGACTTACCTGGGTGTCTGCGTCAATGAGCAGCACAGGGCTGGTATGACAGCGTCCAGGGCAGAAGCGAGTCAATGCAGTGCCCTCTATCTCCCTGCTAACTCTCATCTACCTGTGTCATTAACACACACCCCTGTATACTGCACAACAGCATCAGTATACTCTATACCAGGTAAACTAGCTCTATATGGCATCAGCACACCCTATACAATGTAAACAAGACCTATTTCATTAACACATCCCATACACTGCACGTAGCAACTCTACAGCAATATTCCAGGCCTTATGCACTATAAACTAGCTCTATAGCATTAGCACACTCCACAGTGTAGATGAGCTCTACAGCAACATACCCTATACACCAGCTCTATACCATTAACACAGGCCATACACTGCATACCAACACTATAGCAGCAACCTATACAGTATAAACTAGCCTTATAGCGTCATAACAATCTGTGAACTGTATATCAGCTCTATAACAATAACACGATCTGCAAACTGTATACCAGCTCTATAGTATTAACATGATTTACAGACTGTATACCAGCTCTATAGCATTAACATGATCTAGACAGTATACCAGATCTACAAACACTAACACAGCCCAAatacaatacagacacactacAGGCCGTGTAGCTGCTCtattgcacaaacacacacctggcAGACTGCATTGCCAGCTCCTCAGTTCAACACCCTCCTGGGTCACTGTATACCAGCCCAGTCTCATTAACACCCTCCCTACCCGGCCCCTGAGGGCGCTCTGTGGACAGTGCAGATCAGCCAGAGTATGGGCAAAGGATAAAGACTGCTCTGGGGCCGGGCAGCAGCCGCCCGCCCTGCCGTCCGTTTCTCTGTGCGTGTCCGTCTGCCTGTCCGTCGTCCAGTCGGTGCCACGGCCCCCCCGACCCCTGCAGCTCTCCATCCTGTCCAGCGCAGGgggctcctctctctctcgctctctggaATCTCGCGGTTCTCCTATATTACTGGGGTCTGGGCCATCTTCGGTGTGTGAGTGGGAGAAGGGCTGTGCGTGTGAAGGACTAGCGTTGTGTGTTGCAGTTCTGTGACTGAGGGAGggggtgtgtgtgagcatgtgtgtttAGCATGTGTGTGGCAGTGCTAATGTGTGAGTATCTCTCAGTGCTGGGGACAAAAATTTGCTTGTAGCAGCCAAAGGTATGTCATATTTTACACTAGCTGCTCTCCCCTTGCCATACAGCTCAAGCCAAAACCCCTCTCACTGTCTTGTGAGCAGAAGTGAATGGTTTCAATATGGGcttctcctcctccccaccGTAAAATCTGTGACCTGTTAGAGTCACGATGTGTGAAATGGTCTTTTAAGCGGTTTCTTTTTCTAAAATCTAATTCTGCTTTCTCTACTTCTGCTTTCCAGTTCTCCTCAAGGAAATTGCCAAGAGCTGATGGGAGGCGCAGGTGAAGTCTTGAGGCGTGGGGGTCTGCCCAGTCTATGCAATACATAAGCCTATGCAATACAGAAGGCAAGGGGGCGTGCCTTCGCAAATTTGGCCTGGTAAGGCGTGAGGCTGTACTTCCAAAGCAGCTGTCGGTAACTGGCTTCCCATTCATTGCTTATTTCGCAAACAGCTGCTGACTGTAGGCAGAGCAGGACTTGTTTATAGCAGCTTTAGTTTCAGCGCTTTCACAGAAGTGCGGTCCCCAGCACTGCTCAGTGCATGTGTCACTAGATGCTGGCTTAAATTAATTACTTAGGTGTCTAGTTATTTCGGGGGGCAGGCGTGTGATATGACCCTGTGATTTTATCTGTGAGAGACATGGAAGGTGGTCTCTGAGAGcaagtgtctgtgttttttcgGTTTTGTTGTACggttttgattttaaagcagGGATGCCATTTCCACACAGCTGGGATTTTGGAAAGGAGAGAGGAATGTGCCGGTGTtgctggggggaggggaggggagagagagggcaggctCGGGATCCCCCCCCCTCCAGACGCATGAGGAGGAAGAACAAAACTGAGAACGAAACTGTTCCCCAGAGAGATGACATGTACACAGAGAGGCATGGAAATCTGCGGGGTTTTCCAAAGGGAGTCACAGTTAACAAAAGCTTTGGGTTGtgaaatttataattttttccctgatcatttgtttttgtttttcgtcAAATTCAACATTGAGCAATAGTTATGCTGCAGGACTTTTTGTTTCTTCCcctattttgtttttggctgAATTCACCAGCTTGAACATTGGGGAATTGTtacagtgacatttttttttttttttttagctagaATTCAGAACTCCACCATAGATGTGATCAAGAGTTTCAGTTGTGCCATAACTTTAATCCATATTTATCTAATAGCTCGTGATAAACACTATACTGTAAGTACTGTGCATTACAAGTGGAGTGTGATTTAATTCTGGGATGTACTGTGCCATATAGCTCAGTAGCTTCCCACTGTAAGAACGCAGGCCTCTTCAAGTCTTAATGAGGTTGCTGGCTCAACTAATTAGTTGCTAAAGGAACCAGACAAGCTTCAGTAGAGGCTTAGAGTAGAAGTGGATATGGgatttttctgttatttctttccgtctttatatattttgtttgacaGTTAAAGGGGATTGTGGGCGTTTCAATAGCTCTCTGAGTAGTGAAGGGGggtaaatggaaaacaaaaaaatgaagggaaaatGTGTGGGAGGAaaagctaaattaaaatgaacaagatggGATGGGAGAGGGAGAAGTGAAGGAAATGGATTGGAGGGGGGGATACGGGCTGAACAAATACGGAATAAAGTCACAATCGAAAAAAACCAACTCCCCTGCCCCgatgtattgattaatttgtgACGCCAGTTCTCTGCCCCCATCCTGTTTTAGGATCCCCATTGTTTTCGATCGATTTCCCTGGTATTGAGTGGTTAGCACACTTGTATTTATGTATCCACTATATGACGTATACACTATTTGCGCTGCCAGTTTTTAATTCCCATTGGCAGAGAGGGATTATCTGTTACGTCTTTCACTCTTGTGAGTTCTCTCTCACGTTTGCAGAAGAAGGGACGGAGAGAGCGACAGCAGTGAAAAGATGAAGTGACAGCAATGGCATGATTGGCAGTCTGGATGGTGATATAGATgactccctccatctctcttctcttctttctctcaTCAGGGTAGCAGTCATAGCAGCCTCTCTCgtttggattattttattaattagtttttttctgctCTCCTCTAAGCCCGCGCACGTCTTTCCTGTCCCCTAACTCTTGTTTGTCATTATCAGCTCATCCCTCCCGATCCAGTCTTCCGCATCTCAACCCTCCCTGTCATCCAGGATTTCTCTCATACCTCACACCCGCGCATGCTGTTCTTTcctttactctctctctcaaccttTTTCTCTGGTCACAGGCTTCTCCAATGCAGACTAATATattgctttctctctccatttgcTCATTGATATCAGGGatctccaattatttatttccattaaaatagcTTCTTTTCGCTCTCTCCCCCGTCTCCACACTGACAAACACTACCCAAGGGCAGCAGCCACCTATATTCGAATATCAAAGCCATTTTAAATTTCACTTCACTTAGTGAATTCCACTTAGATTTTTAGCAGTAGGTCGAGGTGTCAGTATCTTATTTGGAGGTGAAtggaaaactttatttttccacatccacgcatgttttttttccatggaGTGTCCAAAATTGGACACTGTAGCCATTTTACGTTTGTGTCTGACATCGGAGACATATGACTGTGGTGAATTTCAAGGGTGAGTGATTGACGCAACGGGGTGTGAGAACTGGGGCATGGTGCATTGTGGGACTTTGAGTCACAGAAGGTTTTGTGGTGTTACTTGAATTGTGGTGTTTTGAGAGACTGGGATGTCTCtttaggttttaattatttgcagaGAGTGGATTCCTCTGTACTGGACATGAGAATAGGCCAAAGTAGCATTTAAAGGCTTCATGATTTTATATTGGATCGTAACTGAGTGTGCAGTAGATTGAAGAGGAGCTGGGCTGaattaaaagtgtgttttttgttttaactgttgaTCTAGGTCTTTTATACTGTGTGCACCAAAGACAAACGCACACACTTTAAGCAAAAGTCAACTGGGACTGAGTGCCACCTTGACCTGGTCAGGGTTCGGGAGGACCAGACTGGGCCCTGGGGGCTGTAGTTTGGATGGGACTTCTCTTCCCTGCGAGTAGGAATTATTCCTATGTTCACAGCAAAGTCTAAAGTGTACTAAAACATCTCCAAGATTCAACAAGAGCTGTGCTGTAGAAACCACTTAATCCAGGGTTTGAATATGAACAAGACTGGGCTCTCATTTGCATCTCACTGTATCTAATGCCTGTGAGAAAAGTGGTGGGGGGAGGGCGCAGAACAGACAGTGTGCCGGTGCCTATAAGGAACAGACCGGATGTGAAGACTGGGCTCCAAGCGGCAAAACACCAGGGCTCTGACTGCACTGCTCTGTGTTAGCTGGTGTGTTTCCAGAATATATTGTTTTGGATGCAGAGAAGTATATTTAAGTTTTATGGTTAAACAACATCTGCTTTCCCCATTTAGTGAAGTGTGCAAAGCTttgggtttttaatttaattaatttataactaAAAGTtctatactaaataaatatcattattattagtcttaTTTCCAGTTACAAGGGCCCTTACATGGTGGGGAGCTTGGCTCCACAGAGGGTTCTTTCCAATGTTGTTTTAAACGTCCAGTAGAAGTAATTTAGCTGGTCTGGATTGTCAAATACAGACTATGTAACTGTTTTAATACAGAGACACTATAAAGCAGAGCAGCTTGTATAGGCATCtaatcaaaattattttagtAGTAATGAGTAATTTTAACTGTATACAGCCCAGTGTTACCAATACTAGTCTACCAGTGTTGATGCCAAGTCCGTATACAGCCAGTGGTGCGTTTGCCTTATTTTTATGCACTCTGCTCAGACGGAGCAGTGTCCGGACACTGTGCAGTTGGGCGTATTATTGTATGGGCCTGGATACGTCTTAGACTAGTCCCTGTTGGCATCATACAGAATTCTGTGTTAACGCACCAGCTAGATGAGGGCCTACAATACAAGGCATTATTTGAAACTGTAGAGCACAGTCACAGTGCCAGGATATCAAAGTTACTGGTATCTCTCATTTTATCAGTCTCTATTGGCATAGTAGAGCCTTGGATAACTAATTGGGGTCAATTCAGCAGTCTCTAACAAAGCCCCGCTGTTCAAAAGACTGTTCCACACTGATGCTTCCACAGCCCACCCACGCCAGGATCTCTGCCCGTTCCTCTGGCGCAGTCAATATCGTCACCGTATGGCCCAGCGTACTGACACAGCTCCCCGACAGCTCTCCATTTTGCCAATGCTCAGCCTGGTATTGTCAGGCAGTCCGTTTCAGTTTAAAAGCCCCCTCAGTCTGGTCAGTACCGACACTGACAAGGCGCACTGCGCTGGCAGAGTGTGCGACAGCGGTCAGTACTGCCAGTATATTGCCTGCCAACTGACTACAGGCATGCGAATGCTAGGCCCAGTCTTGTGTCAGTTCCAGCTGACTCAAGAACGTCATTGGACTGCTTCTTGTTTAGAATCTGAACGTCTTGGTGTACCACTCAGTATTGACTCTGTAAAATCCTGTTTTGGTTTACTGTTCAGTATCGACTATGTAAAGCCCTGTGTCTTGGTGTAACGGTCAGTTTCTACTCTGTAAAGCCCTGTGTCTTGGTGTACCAGTCAGTATCGACTCTGTAGCAACCCTATACAGCCCCATGTGTCTATGTCTGTAGCATGGATTCAGTCAGCATAGCACCCCTATATATGCTGCTGCCGAAATGCTTTGTGTTAAGGGGGTCAGAATCGACCCCATGTACAGGCTGGGCAGTGCAGTACCCAGAATCCTCAGGGCTGCAGCTGTGGCTTGTCAGGGAGGAAGGGCGAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137079 lncRNA downstream 18723 3805656 ~ 3807787 (-) True G109472
TU137060 lncRNA downstream 26387 3730042 ~ 3800123 (-) False AMCG00006398
TU137050 lncRNA downstream 111731 3698885 ~ 3714779 (-) False AMCG00006390
TU137017 lncRNA downstream 171387 3586596 ~ 3655123 (-) False G109439
TU137019 lncRNA downstream 171387 3586596 ~ 3655123 (-) True G109439
TU137130 lncRNA upstream 32297 3866720 ~ 3867041 (-) True G109514
TU137158 lncRNA upstream 141780 3976203 ~ 3976617 (-) True G109540
TU137245 lncRNA upstream 142286 3976709 ~ 4035331 (-) True G109609
TU137260 lncRNA upstream 247384 4081807 ~ 4083452 (-) True G109619
TU137272 lncRNA upstream 304611 4139034 ~ 4139269 (-) True G109628
AMCG00006399 mRNA downstream 2537 3822915 ~ 3823973 (-) True AMCG00006399
AMCG00006398 mRNA downstream 10993 3783642 ~ 3815517 (-) True AMCG00006398
AMCG00006401 mRNA downstream 48006 3776066 ~ 3778504 (-) True AMCG00006401
AMCG00006391 mRNA downstream 84229 3735291 ~ 3742281 (-) True AMCG00006391
AMCG00006390 mRNA downstream 97991 3713752 ~ 3728519 (-) True AMCG00006390
AMCG00006397 mRNA upstream 4625 3839048 ~ 3847723 (-) True AMCG00006397
AMCG00006400 mRNA upstream 13941 3848364 ~ 3858917 (-) True AMCG00006400
AMCG00006402 mRNA upstream 39527 3873950 ~ 3878042 (-) True AMCG00006402
AMCG00006407 mRNA upstream 206071 4040494 ~ 4043227 (-) True AMCG00006407
AMCG00006406 mRNA upstream 215803 4050226 ~ 4056245 (-) True AMCG00006406
TU136502 other downstream 1496519 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1696255 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1802367 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 1944673 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2101662 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 330511 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 2179681 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2950890 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3243966 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4887965 8722388 ~ 8724352 (-) True G110507

Expression Profile