RNA id: TU137140


Basic Information

Item Value
RNA id TU137140
length 1088
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G109523
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3909961 ~ 3911048 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttagcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggttgcgaggctgacgtttggcaactcgaaccttcagctccctcgaCAGATTTTCTATAGGATTAAGGTCTgcagactggctaggccactccagggccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacggtacatgtccccgtccatcgtccctttgatgcggtgcagttgtcctgtccacttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacggcgagttgagttgatgccaaagagcttgattttggtctcatctgaccacaacactttcacccagttctcctctgaatcattcagatgttcattggcaaacttcagacgggcctgtacatgtgctttcttgagctgGGGGACCTTGCGGacactgcaggatttcagtccttcacggcgttgTGTGtgaccaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcccgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgaggtgagatcttgcatggagacccagaccgagggagactgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacagtcttgtccctgacatccttggacagctctttggtcttggccatggtggagagtttggaatccgattgattgattgcttctgtggacaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137110 lncRNA upstream 45229 3864485 ~ 3864732 (+) False AMCG00006393
TU136961 lncRNA upstream 135417 3772549 ~ 3774544 (+) True G109396
TU136954 lncRNA upstream 154920 3722519 ~ 3755041 (+) True G109392
TU136981 lncRNA upstream 179121 3729887 ~ 3730840 (+) True G109412
TU136971 lncRNA upstream 195182 3699108 ~ 3714779 (+) True G109405
TU137147 lncRNA downstream 24932 3935980 ~ 3936902 (+) True G109530
TU137149 lncRNA downstream 32721 3943769 ~ 3943994 (+) True G109532
TU137159 lncRNA downstream 65680 3976728 ~ 4035308 (+) True G109541
TU137200 lncRNA downstream 244916 4155964 ~ 4156206 (+) True G109571
TU137201 lncRNA downstream 245394 4156442 ~ 4156969 (+) True G109572
AMCG00006404 mRNA upstream 13503 3893263 ~ 3896458 (+) True AMCG00006404
AMCG00006393 mRNA upstream 45417 3858934 ~ 3864544 (+) False AMCG00006393
AMCG00006395 mRNA upstream 69963 3832261 ~ 3839998 (+) True AMCG00006395
AMCG00006394 mRNA upstream 83212 3825568 ~ 3826749 (+) True AMCG00006394
AMCG00006396 mRNA upstream 85892 3823571 ~ 3824069 (+) True AMCG00006396
AMCG00006410 mRNA downstream 8856 3919904 ~ 3920782 (+) True AMCG00006410
AMCG00006409 mRNA downstream 10186 3921234 ~ 3921928 (+) True AMCG00006409
AMCG00006408 mRNA downstream 11373 3922421 ~ 3924520 (+) True AMCG00006408
AMCG00006403 mRNA downstream 168578 4079626 ~ 4082166 (+) True AMCG00006403
AMCG00006411 mRNA downstream 180640 4091688 ~ 4099718 (+) True AMCG00006411
TU137096 other upstream 46691 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 269300 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 310264 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 336252 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 403282 3503181 ~ 3506679 (+) True G109362
TU137156 other downstream 52549 3963597 ~ 3963996 (+) True G109538
TU137199 other downstream 241768 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 248475 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 565886 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 613758 4524806 ~ 4527738 (+) True AMCG00006445

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00056384 True 972 mRNA 0.48 3 NC_007115.7 51458762 ~ 51460013 (-)
grasscarp (Ctenopharyngodon idella) TU95874 True 1125 lncRNA 0.46 1 CI01000013 10186533 ~ 10187657 (+)
rainbow trout (Oncorhynchus mykiss) TU1795725 True 1145 lncRNA 0.48 1 NC_048582.1 60742046 ~ 60743190 (-)
eurasian perch (Perca fluviatilis) TU95874 False 1533 lncRNA 0.42 3 NC_053118.1 10746008 ~ 10751849 (+)
eurasian perch (Perca fluviatilis) TU136677 False 1975 lncRNA 0.40 3 NC_053120.1 39356483 ~ 39361708 (+)
striped catfish (Pangasianodon hypophthalmus) TU136677 True 1387 lncRNA 0.40 3 NC_047601.1 15914764 ~ 15917828 (+)
mexican tetra (Astyanax mexicanus) TU136677 True 429 lncRNA 0.45 2 NC_035908.1 5465950 ~ 5466415 (+)