RNA id: TU137149



Basic Information


Item Value
RNA id TU137149
length 226
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G109532
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3943769 ~ 3943994 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCACCGAACAGAGACTCTCTGGGGTCTCAAGGTGCCGGTAACTGgacttcagaaataaaagtgCTAACATCCAGATTTTCATTCTGCATTGCCAACCAATCGTGTTCCCACATCACTTTGACATCAAACCCGTGTAATTTTAAGAATTCGGTTTTATACATTGTCTTTTGATATAACCAaccaaatgttgtgtgtgtgacgcTGTTAATGTCATTTTCACTATAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU137147 lncRNA upstream 6867 3935980 ~ 3936902 (+) True G109530
TU137140 lncRNA upstream 32721 3909961 ~ 3911048 (+) True G109523
TU137110 lncRNA upstream 79037 3864485 ~ 3864732 (+) False AMCG00006393
TU136961 lncRNA upstream 169225 3772549 ~ 3774544 (+) True G109396
TU136954 lncRNA upstream 188728 3722519 ~ 3755041 (+) True G109392
TU137159 lncRNA downstream 32734 3976728 ~ 4035308 (+) True G109541
TU137200 lncRNA downstream 211970 4155964 ~ 4156206 (+) True G109571
TU137201 lncRNA downstream 212448 4156442 ~ 4156969 (+) True G109572
TU137202 lncRNA downstream 213742 4157736 ~ 4159191 (+) True G109573
TU137205 lncRNA downstream 224090 4168084 ~ 4169106 (+) True G109575
AMCG00006408 mRNA upstream 19249 3922421 ~ 3924520 (+) True AMCG00006408
AMCG00006409 mRNA upstream 21841 3921234 ~ 3921928 (+) True AMCG00006409
AMCG00006410 mRNA upstream 22987 3919904 ~ 3920782 (+) True AMCG00006410
AMCG00006404 mRNA upstream 47311 3893263 ~ 3896458 (+) True AMCG00006404
AMCG00006393 mRNA upstream 79225 3858934 ~ 3864544 (+) False AMCG00006393
AMCG00006403 mRNA downstream 135632 4079626 ~ 4082166 (+) True AMCG00006403
AMCG00006411 mRNA downstream 147694 4091688 ~ 4099718 (+) True AMCG00006411
AMCG00006420 mRNA downstream 189874 4133868 ~ 4134566 (+) True AMCG00006420
AMCG00006412 mRNA downstream 203710 4147704 ~ 4151691 (+) True AMCG00006412
AMCG00006413 mRNA downstream 216208 4160202 ~ 4167952 (+) True AMCG00006413
TU137096 other upstream 80499 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 303108 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 344072 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 370060 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 437090 3503181 ~ 3506679 (+) True G109362
TU137156 other downstream 19603 3963597 ~ 3963996 (+) True G109538
TU137199 other downstream 208822 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 215529 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 532940 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 580812 4524806 ~ 4527738 (+) True AMCG00006445

Expression Profile