RNA id: TU137156



Basic Information


Item Value
RNA id TU137156
length 400
RNA type TUCP
GC content 0.43
exon number 1
gene id G109538
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3963597 ~ 3963996 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGACATGCCTGAACCCCAAGCTCTGCAAGAGGCTTTAATGCTTCATCAGAGTGCCGGCTTAAACTCTCAACAGATGGTGGCCTTTTCAGACATTAGCAAGTTTGAGGAgttgttgtctttaaaaattgtaGTGTGGTACCGTTGTGAGGTAAAGGAAGTATTTGTGAAATTTcagacacatcctgaaacccatACACAgactctgtttctcttcctaagtgatagtcattactttggaataaagagtttgacggcttttttgggttgtttgtACGTTTGTCCTTGGTGTTATAAGGCCTTCAATGATAAGCTTAAGCACCGCTGTGACGGTTACTGTAACGTCTGTTTCAATCCGCAATGTCGTAAGGGTTTGGCACCCACCATCCGCTGTAAAGATTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU137149 lncRNA upstream 19603 3943769 ~ 3943994 (+) True G109532
TU137147 lncRNA upstream 26695 3935980 ~ 3936902 (+) True G109530
TU137140 lncRNA upstream 52549 3909961 ~ 3911048 (+) True G109523
TU137110 lncRNA upstream 98865 3864485 ~ 3864732 (+) False AMCG00006393
TU136961 lncRNA upstream 189053 3772549 ~ 3774544 (+) True G109396
TU137159 lncRNA downstream 12732 3976728 ~ 4035308 (+) True G109541
TU137200 lncRNA downstream 191968 4155964 ~ 4156206 (+) True G109571
TU137201 lncRNA downstream 192446 4156442 ~ 4156969 (+) True G109572
TU137202 lncRNA downstream 193740 4157736 ~ 4159191 (+) True G109573
TU137205 lncRNA downstream 204088 4168084 ~ 4169106 (+) True G109575
AMCG00006408 mRNA upstream 39077 3922421 ~ 3924520 (+) True AMCG00006408
AMCG00006409 mRNA upstream 41669 3921234 ~ 3921928 (+) True AMCG00006409
AMCG00006410 mRNA upstream 42815 3919904 ~ 3920782 (+) True AMCG00006410
AMCG00006404 mRNA upstream 67139 3893263 ~ 3896458 (+) True AMCG00006404
AMCG00006393 mRNA upstream 99053 3858934 ~ 3864544 (+) False AMCG00006393
AMCG00006403 mRNA downstream 115630 4079626 ~ 4082166 (+) True AMCG00006403
AMCG00006411 mRNA downstream 127692 4091688 ~ 4099718 (+) True AMCG00006411
AMCG00006420 mRNA downstream 169872 4133868 ~ 4134566 (+) True AMCG00006420
AMCG00006412 mRNA downstream 183708 4147704 ~ 4151691 (+) True AMCG00006412
AMCG00006413 mRNA downstream 196206 4160202 ~ 4167952 (+) True AMCG00006413
TU137096 other upstream 100327 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 322936 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 363900 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 389888 3570039 ~ 3573709 (+) False AMCG00006379
TU136897 other upstream 456918 3503181 ~ 3506679 (+) True G109362
TU137199 other downstream 188820 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 195527 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 512938 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 560810 4524806 ~ 4527738 (+) True AMCG00006445
TU137460 other downstream 1060899 5024895 ~ 5025906 (+) True G109781

Expression Profile