RNA id: TU137199


Basic Information

Item Value
RNA id TU137199
length 2934
RNA type TUCP
GC content 0.45
exon number 1
gene id G109570
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4152816 ~ 4155749 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCACTCCTTCCACATTTTATCGTTGGTCATAAAACCATCCTTAATTATACTTTCCTGACAAAACAACATACTATTCACCTTGATTTCCACTTTTCCTGCATCGTTTATTGTTCGGCAATGATAAGCGACAGATGGACAAAACCAgagtattattaaatatatacatacatacaaacatgacacatacatgcatggttcattgacaaaaaatatttaaaaatatacatgtctCTTAGCTTAAAATCTCCCCAGTGACAGGGAGAGGAAATGATGGAATCGGTAAGAGATTAACccgtataaataaatgtgacgCGTATATTTGACTCAGTGATCAATATCCCCAggacagatatagatatattctGAATCACCTGCACTACACATACAAGCAGGCAAGCCGATACGttattatatagtatttacTACTGTTGCTCCAGTCCTTTGTGGTATAGCTTTTACTCGGCAGAGACAGGCAGATGACACCCAGACTTTGTAAAGGTACTTCATTTACATATTCCACTCAGCGCCCCCACTGAAGAGCCTTTTAGATGCTTGGGTCCATTTCGGATAATCTCCAGGTCCTTCTAACAGTACTGTAgaaggaccagggctggagatcCTGCTGTTACAAGTCTCTGTTTATCTCATGAGGGATGTTAGACATTTGTGTTGGGCCCATATTTAGTGGGTCAAAGTCTTCTCATTGTACTTGCTGGTCTCATACGCTTAGGTCAACTGACTGCATTCATAGccagtgtgtatatgtgtatatatatatatatatatatatatatacacatacacacacacacatatatctatatacatacatacatacatacatacatacatgttgcATTTTCAGGTTACTATACAGCTATTGGCAGACTCCTTCCTTCAAAAAGCTGCTGCAACTTTCAAAAACCCTTCAGCAGAATTAGCTTGGGATCAGAAATCTTCAACAACCTTAAAATATGTCACCGACAACcattctgttgttttatttcccagTCCTTCtagcatatgtatttttttactccATTTTCAATAAAGACAATTAATACACATTGTACATTACTAGGAAAGAGCAGACCTGTACTGTGCCGAGGGCAGGATTGACAAAACAAGCTTACTGGAACAAAAACTGGGAAGTAAAACTGGTACGCAACCTCTTTGCTTTCCTCCTGCCCCTGGAAACACAACCACTAACCAAGTGAATTTAAATGATCACAAGAGTGTTGCCAGACCTCATGCCATGAGATATTTTTGAGAGACCCAGGGATTTTCAGCGCACTTGCTATGAGTCAGAAGGGTCTTATTTTCCCTGTCTTTCGCAACTTACTATCTTGGAAGCCATTTATCCAGCCTCTGAAATCAATCACAAAGCAGCCTTTCACAAAAGTGTGTGTTGCTGATCTCCATCTATAGACAGATAATCGCAAAGCACTGGTTTGGAGTCGATGGGCTTTCTCCCTGATGCCACTGTGCTCAGGTGAGGGTAACTCTGCTGTGCATTGTGTAGATGCGAGATCCTCAGTAACAGGGGGAGAGAGGTGAAATGTCTATGGCATAATGAAGGATTAAATcgcattcattttaaagcaccATCCACCCTTGAAAAAAATAGCCACAAAAAACTCAGAAGgattgaaaaaaacacattttcatatatataaaaagtaacatCATAAATTAAGGCAGAGAGTCGGTCAAATGTTATTGGTATAGGAGATGGGTCAAGCCAAATAGTCCAGACAAAGCTGGCTTCAATCTGAACCCTATAGTCCAGACATATTGGCTCCATTCTGGACTGTGTCATAGCCACCTGTGGCTGGGATTCCCCACAAGAGTGGAGCTGTCTGAGGGCCGCTGGGGGTTGCGTGGGCTGCAGTCAACAAGGGTTTTCCTTTGCACGTAACTCAAGGGAACAGCACCCCCCTGTGTCTGACTGGGACACCTGGGAGTGCTGCAGCCTTCACAGCGAGAGCTCCATCGTAGCGCTGTGGGCCTGTGAGCCGATAGTAAAAGAACAAACCCAAATGGACTTATAATTACTGATTGGTAAACAAtgggaaggtgtgtgtgtgtgtgtgagagagagatagtaaGAGTTTGTGTTGACTGCCTGCATCCGTCCCACATTAAGAACTGGGATTATAGGGGTGAGACCGACTGATTGGTAAggtataaaaactaaaaacaatccacacagattaaaaaaaaacattgtgttgcACCAGCCCACCCTTCCTTCAGGGACAAGACACATGGCCTCCGAGACCTGAGAAAGCGTTATTTAAAAAGCACGCTGAGACAGAGCACATTCTCCAGCAGGTTTCCCGAAATAGGTGCAGGCAGTAGTGCTTAAACTGGGAAAATCCTGCCTCTGAGACCAATAAGTTTCCGAAatcttaaaaaattaaaaatacagatatataaatgtatcagaAAGGTAACAGAGTCCAGACTCTATTGGACACACTGCAACAAAGACTCCCAAAGCTCAAACAAAATCCCTTCGAAATAAAGACACCACGCTGGCCAAGGTGCCCCTCTCTTCACCCCGAGTCCAGTTCAGGGGGGATATTGGGGTCCCGTCAGCGACAGCCGCAGTGGAACTCGGCGGCCGCGTCCTGCACGCTGCCGTCGCTCCAGCCGGCGCAGTCCACGTGGTACCAGGCATCACAGTCGTCACACTGTACCCACTTCACTGTGTCCTGCTGGGGCAGCCGGCAGCGCGGGGAGGCGCAGGGCTCGGCCAGCTCTCGAAGGGGGGTCCCCAGGGCCGCCGGGCGCACCTCGGTCTCAACGTACAGGTGCCCCGACACCAGCGGGTGCTTCCTGGGCCGCCCCCGGCGCTTCCTggaagagaggaaaaagagaaagatgaACGAAGGAGACCAATCATTGAGACAGGATCACCAACATGGTAC

Function

GO:

id name namespace
GO:0042995 cell projection cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0005929 cilium cellular_component

KEGG:

id description
ko03420 Nucleotide excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137159 lncRNA upstream 117508 3976728 ~ 4035308 (+) True G109541
TU137149 lncRNA upstream 208822 3943769 ~ 3943994 (+) True G109532
TU137147 lncRNA upstream 215914 3935980 ~ 3936902 (+) True G109530
TU137140 lncRNA upstream 241768 3909961 ~ 3911048 (+) True G109523
TU137110 lncRNA upstream 288084 3864485 ~ 3864732 (+) False AMCG00006393
TU137200 lncRNA downstream 215 4155964 ~ 4156206 (+) True G109571
TU137201 lncRNA downstream 693 4156442 ~ 4156969 (+) True G109572
TU137202 lncRNA downstream 1987 4157736 ~ 4159191 (+) True G109573
TU137205 lncRNA downstream 12335 4168084 ~ 4169106 (+) True G109575
TU137227 lncRNA downstream 74485 4230234 ~ 4230484 (+) True G109597
AMCG00006412 mRNA upstream 1125 4147704 ~ 4151691 (+) True AMCG00006412
AMCG00006420 mRNA upstream 18250 4133868 ~ 4134566 (+) True AMCG00006420
AMCG00006411 mRNA upstream 53098 4091688 ~ 4099718 (+) True AMCG00006411
AMCG00006403 mRNA upstream 70650 4079626 ~ 4082166 (+) True AMCG00006403
AMCG00006408 mRNA upstream 228296 3922421 ~ 3924520 (+) True AMCG00006408
AMCG00006413 mRNA downstream 4453 4160202 ~ 4167952 (+) True AMCG00006413
AMCG00006423 mRNA downstream 23301 4179050 ~ 4185310 (+) True AMCG00006423
AMCG00006424 mRNA downstream 31844 4187593 ~ 4190086 (+) True AMCG00006424
AMCG00006432 mRNA downstream 98585 4254334 ~ 4266243 (+) True AMCG00006432
AMCG00006433 mRNA downstream 195903 4351652 ~ 4360196 (+) True AMCG00006433
TU137156 other upstream 188820 3963597 ~ 3963996 (+) True G109538
TU137096 other upstream 289546 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 512155 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 553119 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 579107 3570039 ~ 3573709 (+) False AMCG00006379
TU137203 other downstream 3774 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 321185 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 369057 4524806 ~ 4527738 (+) True AMCG00006445
TU137460 other downstream 869146 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 925132 5080881 ~ 5098698 (+) True G109795

Expression Profile