RNA id: TU137202


Basic Information

Item Value
RNA id TU137202
length 1456
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G109573
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4157736 ~ 4159191 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCTGCTGTGGTCCACCATATACACCCTCCATCCTTCATcctgctcttcctcttccttctgCGCCTGCAGCTCGGCGTGGATTCGCGAAATGAGCTCCGGCCGACTCTCCGACTGCAGCGTCACGTCGCACAGCTCGGCGCGCCGGCCCAGGCGGAACACGCAGCGGGGCAGGGCCGGCCTGAAGGTGTACAGGTCCCGGGCGGCGTCCGAGCTGGAGCCCGAGGACGGTCCGATACGCAGCAACTGGAAGCAAGGCTGTACTTCCGATAACATGCCGGGCGGGGACCCCCGACACGCCGAGGGGAGGATCAGGCGGTGGGGATGACCGGGCGAATTGGTTTCAAGAATGGAAGTGGGGATGCTACACTTTAAAACATAACTTCTGACATCTTTCTGTAGCCTTTGCACCActactgtgtgtgcgtgttttaattattaattaattattatgacaCTTTCAGCACATGCACTGACTACTAAATATGAACTGTGACATCAGAAGTCAGATTGCACCCTAAGGATCACCTAGACAAAACACCTGTCGGATTACGGTGTTTTGTACCTATTCAAATACATGAgcgtaaacaaacaaacacaaatcagatGAGACACTGTTGCAATTATGAAATCTGCCTAAAATACAACAGTTATTAACTTGAAAGCCGTTTACGAAATGCACTCAAATCAATggtgtttttaattgcttagTTCGGGAAAAATAAGCAAGACCGACTTGTATATTCACTTATAATTCCTGTTTTGAAAGAAGACACGGTTCTCACCTGTCCGGCTTAAACTAAAGGCATTTCTCCAGGAGACTCGACCTGTCAGTCCTGCCTCTATCCTCGGAAGACGCACTCAGAGGAAACCAGGGATTGATCGACAGCTGGCCTATGTTTACCCCTTTCAAGCATCACAAAACGACCGACAAATCGTGTAATTTGGAAAGACTGTGTAGCCTGtcgttggttttattttaattcttatttaaaatcttACTAAAAGCGGTGCTGGTTGCGACAAGGAACGCGTTTCAGACACTACGCCCATGTCCTGTGGCTTCAAATACTGCCATCGATAAACAcgcaaatacacaaataaagagaaaacaatccTATGTACACGGAGCAAATAAAACACTTGGAGTCCAGTATTTACGCCATAAAGTGTGTCCGCAGGTCCTGTGTGATATGTGTCAAGGGCTGATATGTGTCAAAGCAGCTGTTTCCGGCTCTGCCAGCTATATGACCTACATATAGATTTGAGATCTTGATCGATTGCAGTGGTCCTTAAATTCACCCTCCCAAGCGACCACCTGCCGAGCCCCCCCACCGATCACTCACATCGACCTGCAGTTATCCAGCGATCCGCCGTTAGTGTGCAATGAGgtggggggggaaagaaaaagctttGTGAGTTGCACGGCCGCACCGTCCTCTCCCTGGTTCGTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137201 lncRNA upstream 767 4156442 ~ 4156969 (+) True G109572
TU137200 lncRNA upstream 1530 4155964 ~ 4156206 (+) True G109571
TU137159 lncRNA upstream 122428 3976728 ~ 4035308 (+) True G109541
TU137149 lncRNA upstream 213742 3943769 ~ 3943994 (+) True G109532
TU137147 lncRNA upstream 220834 3935980 ~ 3936902 (+) True G109530
TU137205 lncRNA downstream 8893 4168084 ~ 4169106 (+) True G109575
TU137227 lncRNA downstream 71043 4230234 ~ 4230484 (+) True G109597
TU137307 lncRNA downstream 155440 4314631 ~ 4316465 (+) True G109656
TU137312 lncRNA downstream 169678 4328869 ~ 4329278 (+) True G109660
TU137314 lncRNA downstream 175132 4334323 ~ 4335450 (+) True G109662
AMCG00006412 mRNA upstream 6045 4147704 ~ 4151691 (+) True AMCG00006412
AMCG00006420 mRNA upstream 23170 4133868 ~ 4134566 (+) True AMCG00006420
AMCG00006411 mRNA upstream 58018 4091688 ~ 4099718 (+) True AMCG00006411
AMCG00006403 mRNA upstream 75570 4079626 ~ 4082166 (+) True AMCG00006403
AMCG00006408 mRNA upstream 233216 3922421 ~ 3924520 (+) True AMCG00006408
AMCG00006413 mRNA downstream 1011 4160202 ~ 4167952 (+) True AMCG00006413
AMCG00006423 mRNA downstream 19859 4179050 ~ 4185310 (+) True AMCG00006423
AMCG00006424 mRNA downstream 28402 4187593 ~ 4190086 (+) True AMCG00006424
AMCG00006432 mRNA downstream 95143 4254334 ~ 4266243 (+) True AMCG00006432
AMCG00006433 mRNA downstream 192461 4351652 ~ 4360196 (+) True AMCG00006433
TU137199 other upstream 1987 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 193740 3963597 ~ 3963996 (+) True G109538
TU137096 other upstream 294466 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 517075 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 558039 3599241 ~ 3599697 (+) False AMCG00006385
TU137203 other downstream 332 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 317743 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 365615 4524806 ~ 4527738 (+) True AMCG00006445
TU137460 other downstream 865704 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 921690 5080881 ~ 5098698 (+) True G109795

Expression Profile