RNA id: TU137245


Basic Information

Item Value
RNA id TU137245
length 679
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G109609
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3976709 ~ 4035331 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttccaaagatataaattgtcaaatttattaaaaacaaagactaaatgtagcactacactaattatacaaaagggaaaaactaattaaaattcaactctagatcaacaaatcaaagacaaatcacttccgtgaccaaatcaaagaccatgggatcacaTATGATAATACACAAATCGttagacaaaaaaataaacacattgactacaataccggttagtaagacgaaggtgagtctcattagtattgttagtcagacattaaataagtacgcaggttagtatttatgtcagtctcatttacgtttaggtgccgagaaagatcctatcattacttgttaccacaatttcccttaactgattattattcaatgattaaggataggcagggccaccaataatctaatgtctattaacgtgtgtcaatttcagactaaacagttaaacaggaatgagaagatatttctcggcgttgacaggtcttttttctaaaattgtcaacaaaacagtttaatgcaacacacatttatatttaagcaaaactaaatgatattacacattgttgagttatgaatcacagaataacatttctaattgatttctcaaatgtcatgaatcNtaaacttatctgaacttcgtcgcagagaggcctctctgtcttcgggctcagataacgGCACACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137158 lncRNA downstream 92 3976203 ~ 3976617 (-) True G109540
TU137130 lncRNA downstream 109668 3866720 ~ 3867041 (-) True G109514
TU137095 lncRNA downstream 142286 3826510 ~ 3834423 (-) True G109483
TU137079 lncRNA downstream 168922 3805656 ~ 3807787 (-) True G109472
TU137060 lncRNA downstream 176586 3730042 ~ 3800123 (-) False AMCG00006398
TU137260 lncRNA upstream 46476 4081807 ~ 4083452 (-) True G109619
TU137272 lncRNA upstream 103703 4139034 ~ 4139269 (-) True G109628
TU137273 lncRNA upstream 117580 4152911 ~ 4153581 (-) False AMCG00006414
TU137276 lncRNA upstream 128651 4163982 ~ 4164557 (-) True G109632
TU137278 lncRNA upstream 130997 4166328 ~ 4166589 (-) True G109634
AMCG00006402 mRNA downstream 98667 3873950 ~ 3878042 (-) True AMCG00006402
AMCG00006400 mRNA downstream 117792 3848364 ~ 3858917 (-) True AMCG00006400
AMCG00006397 mRNA downstream 128986 3839048 ~ 3847723 (-) True AMCG00006397
AMCG00006399 mRNA downstream 152736 3822915 ~ 3823973 (-) True AMCG00006399
AMCG00006398 mRNA downstream 161192 3783642 ~ 3815517 (-) True AMCG00006398
AMCG00006407 mRNA upstream 5163 4040494 ~ 4043227 (-) True AMCG00006407
AMCG00006406 mRNA upstream 14895 4050226 ~ 4056245 (-) True AMCG00006406
AMCG00006405 mRNA upstream 23427 4058758 ~ 4066143 (-) True AMCG00006405
AMCG00006419 mRNA upstream 53969 4089300 ~ 4090132 (-) True AMCG00006419
AMCG00006416 mRNA upstream 64116 4099447 ~ 4108705 (-) True AMCG00006416
TU136502 other downstream 1646718 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 1846454 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 1952566 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2094872 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2251861 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 129603 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 1978773 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2749982 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 3043058 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4687057 8722388 ~ 8724352 (-) True G110507

Expression Profile