RNA id: TU137257


Basic Information

Item Value
RNA id TU137257
length 1644
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G109616
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4266827 ~ 4268470 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGTAcatgtgttttcattataattattcttataGAACAATTCACATTCCAAGTGTTAACATATCATTATTTGGCAGGTAAATGCTGTGgcacaacacacaaataatatgcacaaatacacaaagaTGTATTAATCAATATCACAATTTCAGCTTTCTCCAGAGCCTAGCACACAGTGAGCAAACACAAGTGTACCAGTAACAATTTACAGCTGATTagcattacaaattacagtggAAAGTATTAATATAAAGATTAAATTAAGTGTCATTAATCACAGTCTAATGATAATTTGTTGTTATTAAGGAATGAAACATGTACCCTCTATGTTAGCACTTTGTAACTACACCAGtcagccaaaacattatgaccacctgcctaatattgtgtaggtcccccttttacTGCTAAAACAGCcttgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaaattgggaggtggggcctccatggatcggacttgtttgtccagcacatcccatagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttcaAATCgatgttgtgttcctcaaaccattcctgaacaatttttgctttgtggcagggcgtattatcctgctgaaagaggccaatgccatcagggaataccatgtccatgaaagggtgtacatggtctgcaacaatgtttaggtaggtggtacgtgtcaaagtaacatccacatgaatggcaggacccaaggtttcccagcagaacattgcccaaagcatcacactgcctccgccggcttgccttcttcccatagtgcatcctggtgccatgtgttatCCAGGTAAACAACGCATACCCACACGACCATACCCGTGATGTAAtagaaaatgtgattcatgaGACCAGGCcactttcttccattgctccgtgatccagttctgatgctcacgtgcccattggaggcgctttcggcagtggacacggctcagcatgggcaccctgactggtctgcggctacgcagcccaaTATGCagcaaactgtgatgcactgtgtgttctgacacctttctgtcagaaccagcattcactttttcagcaatttgagctacagtagctcgtctgttggatcggaccacacgggccagccttcacaccccacgtgcatcaatgagccttggccgcccatgaccctgtggCTGGTtaaccgcttttccttccttggaccacttttgataggtactgaccactgcagactgggaacatcccacaagagctgcagttttggagatgctctcacccagtcgtctagccatcacaatgtggcccttgtcaaagtcgctcagatccttacgcttgcccattttgcttgcttctaacacatcaacttttaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtcataatgttatggctgattggtgtatatcaACTGTGAATCAACTTTTTAATCATATATGGAGTTAATCACAAGGAACCTCACAATACTTAATAATGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137280 lncRNA downstream 97715 4168050 ~ 4169112 (-) False AMCG00006415
TU137279 lncRNA downstream 99588 4166951 ~ 4167239 (-) True G109635
TU137278 lncRNA downstream 100238 4166328 ~ 4166589 (-) True G109634
TU137276 lncRNA downstream 102270 4163982 ~ 4164557 (-) True G109632
TU137273 lncRNA downstream 113246 4152911 ~ 4153581 (-) False AMCG00006414
TU137298 lncRNA upstream 6859 4275329 ~ 4276386 (-) False AMCG00006429
TU137341 lncRNA upstream 39703 4308173 ~ 4311951 (-) True G109689
TU137350 lncRNA upstream 75917 4344387 ~ 4349812 (-) True G109692
TU137406 lncRNA upstream 245840 4514310 ~ 4515575 (-) True G109735
TU137408 lncRNA upstream 247467 4515937 ~ 4521369 (-) True G109736
AMCG00006428 mRNA downstream 15104 4245185 ~ 4251723 (-) True AMCG00006428
AMCG00006427 mRNA downstream 24268 4233664 ~ 4242559 (-) True AMCG00006427
AMCG00006430 mRNA downstream 36302 4222078 ~ 4230525 (-) True AMCG00006430
AMCG00006426 mRNA downstream 48956 4200761 ~ 4217871 (-) True AMCG00006426
AMCG00006425 mRNA downstream 69032 4195320 ~ 4197795 (-) True AMCG00006425
AMCG00006429 mRNA upstream 1946 4270416 ~ 4277155 (-) True AMCG00006429
AMCG00006435 mRNA upstream 46252 4314722 ~ 4330918 (-) True AMCG00006435
AMCG00006437 mRNA upstream 67202 4335672 ~ 4336182 (-) True AMCG00006437
AMCG00006434 mRNA upstream 98780 4367250 ~ 4368596 (-) True AMCG00006434
AMCG00006436 mRNA upstream 108211 4376681 ~ 4387311 (-) True AMCG00006436
TU137277 other downstream 101227 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 1936836 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2136572 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2242684 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2384990 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1745634 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2516843 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2809919 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4453918 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4519348 8787818 ~ 8794062 (-) True G110520

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000065_04775143_04786346.mRNA True 4893 mRNA 0.41 2 CI01000065 4771137 ~ 4786876 (+)
striped catfish (Pangasianodon hypophthalmus) TU216450 True 9568 TUCP 0.41 2 NC_047605.1 16913258 ~ 16922922 (+)