RNA id: TU137276


Basic Information

Item Value
RNA id TU137276
length 576
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G109632
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4163982 ~ 4164557 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTGAACAGTGTCCAGTCTCTTGCAGGCAAAGCTGATTCTCTGCCCCAGATTGAGTAGACGAGACTCGGCCAAGACCAAcgccgtctctctctccttgaACTCCGCCCGGCACCTGCGGACAGAGACAGCATAAAATACTAAAGACCTTTTCAGGCCTGATACACAACAGCTCTTCCTCTCAGGAGCTCATCCTTTTCAACATCTTTCCTACATTCTCCCAGAGTGCACCGGTACCTCACAACAGCCTCAGCCAGCTGCCTCACTGCGCTCTCGGCCTCCTCTCTCCTTGCCTCCAGCCTCAGGGACTCGCCTCGCGCCCGGGACAGTTCTTGCTGCACTGCCTACgacagcaaaaacatttacGATCTGCCTGCGATCGCTCTCGCCACCAGGAACAAGAGGCGGAGGGAGGCTGTGCTAAACCTATAGAGCGACGTAATGAGCCCTGCTGGCGTGTGTCCCCTCACCGCACTCcccactctctccatctccagcTCGGCAGTCCTGTCCTCCAAGCTGTGCTGTAGCACACTGAGCTGCTGGCCCTGTCTCTTCAGACCCCCTTCCAGTGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137273 lncRNA downstream 10401 4152911 ~ 4153581 (-) False AMCG00006414
TU137272 lncRNA downstream 24713 4139034 ~ 4139269 (-) True G109628
TU137260 lncRNA downstream 80530 4081807 ~ 4083452 (-) True G109619
TU137245 lncRNA downstream 128651 3976709 ~ 4035331 (-) True G109609
TU137158 lncRNA downstream 187365 3976203 ~ 3976617 (-) True G109540
TU137278 lncRNA upstream 1771 4166328 ~ 4166589 (-) True G109634
TU137279 lncRNA upstream 2394 4166951 ~ 4167239 (-) True G109635
TU137280 lncRNA upstream 3493 4168050 ~ 4169112 (-) False AMCG00006415
TU137257 lncRNA upstream 102270 4266827 ~ 4268470 (-) True G109616
TU137298 lncRNA upstream 110772 4275329 ~ 4276386 (-) False AMCG00006429
AMCG00006414 mRNA downstream 5859 4152816 ~ 4158123 (-) True AMCG00006414
AMCG00006421 mRNA downstream 22348 4134610 ~ 4141634 (-) True AMCG00006421
AMCG00006422 mRNA downstream 31235 4131968 ~ 4132747 (-) True AMCG00006422
AMCG00006418 mRNA downstream 33125 4125812 ~ 4130857 (-) True AMCG00006418
AMCG00006417 mRNA downstream 40345 4109975 ~ 4123637 (-) True AMCG00006417
AMCG00006415 mRNA upstream 4480 4169037 ~ 4177052 (-) True AMCG00006415
AMCG00006431 mRNA upstream 25292 4189849 ~ 4193150 (-) True AMCG00006431
AMCG00006425 mRNA upstream 30763 4195320 ~ 4197795 (-) True AMCG00006425
AMCG00006426 mRNA upstream 36204 4200761 ~ 4217871 (-) True AMCG00006426
AMCG00006430 mRNA upstream 57521 4222078 ~ 4230525 (-) True AMCG00006430
TU136502 other downstream 1833991 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2033727 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2139839 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2282145 1881282 ~ 1881837 (-) True G108829
TU136131 other downstream 2439134 1722561 ~ 1724848 (-) True AMCG00006298
TU137277 other upstream 377 4164934 ~ 4165600 (-) True G109633
TU137807 other upstream 1849547 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2620756 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2913832 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4557831 8722388 ~ 8724352 (-) True G110507

Expression Profile