RNA id: TU137278



Basic Information


Item Value
RNA id TU137278
length 262
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G109634
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4166328 ~ 4166589 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGACCTAATAGAGTGACCTAGAAATCCAGCTGGACTGGGAACTCTCCAGTGCCAGGGCTAGTAACCACATCTCCAGATTCCCTGGGACCACAGGCAGAATCTTGCTCACCATCAGGAGATTTTTGTCCCTCTCTGCCTCCCGTAGTTTCCTCTGCAGCTCCTCCGTCTCCTTCCGTCTGTGCTCCTCCTGTAGCCTCTGCAGCTcctgctctcgctctctctctttcgccgTCTGTCGGCTCGACTGTCTCAGAGCTACAAC

Function


GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU137276 lncRNA downstream 1771 4163982 ~ 4164557 (-) True G109632
TU137273 lncRNA downstream 12747 4152911 ~ 4153581 (-) False AMCG00006414
TU137272 lncRNA downstream 27059 4139034 ~ 4139269 (-) True G109628
TU137260 lncRNA downstream 82876 4081807 ~ 4083452 (-) True G109619
TU137245 lncRNA downstream 130997 3976709 ~ 4035331 (-) True G109609
TU137279 lncRNA upstream 362 4166951 ~ 4167239 (-) True G109635
TU137280 lncRNA upstream 1461 4168050 ~ 4169112 (-) False AMCG00006415
TU137257 lncRNA upstream 100238 4266827 ~ 4268470 (-) True G109616
TU137298 lncRNA upstream 108740 4275329 ~ 4276386 (-) False AMCG00006429
TU137341 lncRNA upstream 141584 4308173 ~ 4311951 (-) True G109689
AMCG00006414 mRNA downstream 8205 4152816 ~ 4158123 (-) True AMCG00006414
AMCG00006421 mRNA downstream 24694 4134610 ~ 4141634 (-) True AMCG00006421
AMCG00006422 mRNA downstream 33581 4131968 ~ 4132747 (-) True AMCG00006422
AMCG00006418 mRNA downstream 35471 4125812 ~ 4130857 (-) True AMCG00006418
AMCG00006417 mRNA downstream 42691 4109975 ~ 4123637 (-) True AMCG00006417
AMCG00006415 mRNA upstream 2448 4169037 ~ 4177052 (-) True AMCG00006415
AMCG00006431 mRNA upstream 23260 4189849 ~ 4193150 (-) True AMCG00006431
AMCG00006425 mRNA upstream 28731 4195320 ~ 4197795 (-) True AMCG00006425
AMCG00006426 mRNA upstream 34172 4200761 ~ 4217871 (-) True AMCG00006426
AMCG00006430 mRNA upstream 55489 4222078 ~ 4230525 (-) True AMCG00006430
TU137277 other downstream 728 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 1836337 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2036073 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2142185 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2284491 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1847515 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2618724 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2911800 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4555799 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4621229 8787818 ~ 8794062 (-) True G110520

Expression Profile