RNA id: TU137279


Basic Information

Item Value
RNA id TU137279
length 289
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G109635
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4166951 ~ 4167239 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACATTCACATATACTGACTTCATTACAGACtgattttttactttcactttctttaCTGGATGACATGCTGACCTAACTAGATAAAGAATCAATACAAGTTTGGAAAGTCAAATGTTTCACTGTTTGGTCACCTTTTGAAGAAGGCTTGGCACTAGGCCCCACAGCCTGGGACTTTCCTGCTGGCCTAGCTGGCTGGGGCTGCTCTGCCAGGGCTGAGGACGTCTGCAGAGCGGCTGACCTGGTTTTCTTATACTGACTCAACAGACCCTCCTGTCGTATTGTGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137278 lncRNA downstream 362 4166328 ~ 4166589 (-) True G109634
TU137276 lncRNA downstream 2394 4163982 ~ 4164557 (-) True G109632
TU137273 lncRNA downstream 13370 4152911 ~ 4153581 (-) False AMCG00006414
TU137272 lncRNA downstream 27682 4139034 ~ 4139269 (-) True G109628
TU137260 lncRNA downstream 83499 4081807 ~ 4083452 (-) True G109619
TU137280 lncRNA upstream 811 4168050 ~ 4169112 (-) False AMCG00006415
TU137257 lncRNA upstream 99588 4266827 ~ 4268470 (-) True G109616
TU137298 lncRNA upstream 108090 4275329 ~ 4276386 (-) False AMCG00006429
TU137341 lncRNA upstream 140934 4308173 ~ 4311951 (-) True G109689
TU137350 lncRNA upstream 177148 4344387 ~ 4349812 (-) True G109692
AMCG00006414 mRNA downstream 8828 4152816 ~ 4158123 (-) True AMCG00006414
AMCG00006421 mRNA downstream 25317 4134610 ~ 4141634 (-) True AMCG00006421
AMCG00006422 mRNA downstream 34204 4131968 ~ 4132747 (-) True AMCG00006422
AMCG00006418 mRNA downstream 36094 4125812 ~ 4130857 (-) True AMCG00006418
AMCG00006417 mRNA downstream 43314 4109975 ~ 4123637 (-) True AMCG00006417
AMCG00006415 mRNA upstream 1798 4169037 ~ 4177052 (-) True AMCG00006415
AMCG00006431 mRNA upstream 22610 4189849 ~ 4193150 (-) True AMCG00006431
AMCG00006425 mRNA upstream 28081 4195320 ~ 4197795 (-) True AMCG00006425
AMCG00006426 mRNA upstream 33522 4200761 ~ 4217871 (-) True AMCG00006426
AMCG00006430 mRNA upstream 54839 4222078 ~ 4230525 (-) True AMCG00006430
TU137277 other downstream 1351 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 1836960 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2036696 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2142808 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2285114 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1846865 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2618074 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2911150 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4555149 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4620579 8787818 ~ 8794062 (-) True G110520

Expression Profile