RNA id: TU137306


Basic Information

Item Value
RNA id TU137306
length 3176
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G109655
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4374148 ~ 4377377 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGTGTATTCGAAAATgttactttattaaaatatctacaaaaaaaacgaaacaagaTAAACAACATGAGAACAAAGGAACTCCAGCTTCTGACAGATCAGGACAAAGAAGAGGGGAACAAGGGAGGAGACACAAGTAATGAAATCCCAGAAAAAAAAGACGGGAAACGAAACAAAAAGCGACAATTCCATATATTAGTGTAAAAATCTGTCCCTTGCAATATGTACACATCATTagttcaggaaaataaaaaacaaaaacgacgTTTAAGCAGGAGCACGTACAGTGTATCAAAAGAGACCAGACGAACAGCAGTACAGACGACAACACATCGCCCCTGTAGACCACTCTCTCATCTTGGCACTAATATTTACTCTCGTTtgatagaaaaaacaaatacaacacatcgagttcttttgtgtgtgtgtgcgtgtgcgtgtgctgcACCACTAAGCTATCAATCTGTACACAAGAAATCCTAGCTTACACCCAGCAGAAATCTCCAGTCTTCAATAAAAGGCAGAGAAAAAGCACACTTGTACTGTATTGGTTCCAGTCACAAACAGACATGACATTCAAAGTACAAACCCTGCAACACAACCACTCTGCGCTCCGGTTTCAGCTAATACAGTCACTACAGCCAAAAACCCATCAATCCATCAATAAGAACATAGCAGTAGATATACTGGGGTTTGACTGGCAAGATTTGCAAAGGAAAGCTTGTTTAATTAGTCTGTCTttggacagctgatgaaattgAGTGTGGACCCGCAACGCAACGTAACAACAACCGCTACACAAGTCCGGCTGCACACGGGGGCGTCCGTTTCAAGATTAACTAAACGTGTAAATGTCCGGACCCAGACTGATAGTTTTCTGAGCAACAGCGATTGATTAATAAGAGATGTAGACCGAATGATCGTGATAgctcttttcacttttttctattctttaaaCTCGTAGCCATCAACGCTCTCCCACACACTTCCTGCTCCTTATCTCCCACCGTGAGATCGAGGGCACTGGCTGGTCTCAGCAGCGTAGTTTAAACCGCTCTGAATAATGCAGCCGATTTCCCCAGCATGGGGTGTGATCCATCCTTCGCACATAGAGCGAAAAGATCAACAACGAtgaaaacaaacgaacaaacaacACATTGCGTTAAAAAAAGGCTTAGCTTATTaatgattgttatttttcttttctgatcaGCAGTAAGTAGTAAGTGAAGTCACGGATGGATCAGCGAGCTGTATCCCAGATGAGAAGGGGTGTGGATACTGATGTGGACCGAGCcacgttgtgtgtgtgtgtgtgtgtgtgagtgagtgtgtgtacagtCCAGTGGATTGCGACTCGCTATGCAGAGTCGAATGGGGCTCTAGAACTCTAGTTCCACCTCTCTGTGACACTGCCAGGGCCGGGCCACCACTGAGGCACTGTGACTGATCACAATCGGCACTTCTGCTTTCTCAATTCCTGTTATTCGATGGCCGGCACATCGCACTAAGCTGCGGTTAAGACCGGCTGCTTCCTACTGGCGACACGATCTTGTGACAGTCAATGCCACCACCCGACACCCGGTCACTTCCAACGAAGCGCCTCTGCTTGGGCCCACACCACTACGGATAACCCATTGCACAAGATGTATGGATTCTCTAGAAGGCGGCTTCCATAGACGGGCTTTATTTAGACATTTCTCAGAGCTCCTTCCAATGACATAATTTCTCTCCAGCAGTCAAGCTCAGTTTTGATTTGAAGCTGTAGAGTACGCAGTATCAGCATCATTAGCAAACGATTCAGATTCACAGGAATCAGAGGGGGCTGTTACAAACCCACTTATTTCTCCATCGTTAACAGGCCCGAAACATGTCTCTCAATAGACTATCTGATACAGAACGGCAGTATTGCTCTTTCCTGGCTGTTAAACATGTTGTTTGTAGGggccttgttttatttatagctTGAAACGTCTCCTGGCCTCTAACGGTGGTTCACCGCTCGTTCGGTTGACAGTGTGTTTACTCTTGCTGTGTTCCCGGGAAGATTTTTGCTTAAAGGAAAGTAAACAAATGCCTGACTGACTTGACCGATTCTCTGTGCTCTGAATAGATTGGCCTTTTCCTGCTCGGTGCCCTAGAAATGGCAAGCCTGGTTATCTCAATCTGGGCTGATGAAacggaaaaagaaaaaaaatccccaaaaggTCAAAGCAAAATCCCTTCACCAGCAGCCCACGGCGCGCCCCTCTGCCCAGCCCTCTACCAGCACAGCGTTAAAGTGACTCCTGGGGAGGGATTCTGAGGAGGGGgtcaacttaaaaaaacaaacaaaagaatctAAACCGAGCCAGCGGTCACTGGACCCCCCcgaccccccctccccaacaacaacaaaaaataataatgaaaatgaaaatataaaagaacCCCCCCCTCGATACACATTTTGTCCTTCGATaaccctcccacccccccgACACGTTCACCAAGTCTGTTCCCAGTCACAGCTTGGGGGCATATCTGATAATGGCAGAGAAACCAaattcctccctccctccctctctctctcgccactTAAGTGTCTTTGCTCCTCACCTCATTTGCCTTTGTGAAAACAATCACTTAGGTTTACATATAGTTGTTTTTTGGTGGCACGAAACTGGTTCTGTTTGATCTGACACATTAGATGCATCTGCTCATCGGTGCGtgatactacactacactatttAAACGGCGTTAAACAGCACTGAGACTCCTCCCACAAGACACCAGGCCTCTCGACGAACAGCCTGTCCGTCTGAGCCCGGGGTATCGGGAGCAAGAGAGCGAGGGAGACGGGTTTGGGAGATCGTGTGgcagttcagtgtgtgtgtttcagtgaaaatgtgggtgggggggggggggggggggggggggagcggTCATCTAATTACACTGGCAGTTtaccccaccccaccacccccgCTCTCTCTACACCATGTTCATGGCGTCCTCCAGCAGGAAGCGGTGGATGTTGGGGAAGGAGGGCCGCTCCTTGAAGTCTCGCCCCCAGCAGCTCAGCATCAGCTCGTACAGACCCTGGGGGCACACGTCGGGCCGGGACAGGTACAcctgagagggagggggagagagagagagagagagagagagagagagagagagagagagaggtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137314 lncRNA upstream 38698 4334323 ~ 4335450 (+) True G109662
TU137312 lncRNA upstream 44870 4328869 ~ 4329278 (+) True G109660
TU137307 lncRNA upstream 57683 4314631 ~ 4316465 (+) True G109656
TU137227 lncRNA upstream 143664 4230234 ~ 4230484 (+) True G109597
TU137205 lncRNA upstream 205042 4168084 ~ 4169106 (+) True G109575
TU137383 lncRNA downstream 91014 4468391 ~ 4473008 (+) True G109713
TU137391 lncRNA downstream 141540 4518917 ~ 4521249 (+) True G109721
TU137446 lncRNA downstream 545755 4923132 ~ 4924794 (+) True G109767
TU137458 lncRNA downstream 640712 5018089 ~ 5020403 (+) True G109779
TU137459 lncRNA downstream 643919 5021296 ~ 5022178 (+) True G109780
AMCG00006433 mRNA upstream 13952 4351652 ~ 4360196 (+) True AMCG00006433
AMCG00006432 mRNA upstream 107905 4254334 ~ 4266243 (+) True AMCG00006432
AMCG00006424 mRNA upstream 184062 4187593 ~ 4190086 (+) True AMCG00006424
AMCG00006423 mRNA upstream 188838 4179050 ~ 4185310 (+) True AMCG00006423
AMCG00006413 mRNA upstream 206196 4160202 ~ 4167952 (+) True AMCG00006413
AMCG00006438 mRNA downstream 64584 4441961 ~ 4450469 (+) True AMCG00006438
AMCG00006446 mRNA downstream 111120 4488497 ~ 4496374 (+) True AMCG00006446
AMCG00006444 mRNA downstream 119029 4496406 ~ 4516083 (+) True AMCG00006444
AMCG00006445 mRNA downstream 147431 4524808 ~ 4525972 (+) False AMCG00006445
AMCG00006442 mRNA downstream 164735 4542112 ~ 4562075 (+) True AMCG00006442
TU137203 other upstream 212175 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 218399 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 410152 3963597 ~ 3963996 (+) True G109538
TU137096 other upstream 510878 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 733487 3637743 ~ 3640661 (+) False AMCG00006387
TU137384 other downstream 99557 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 147429 4524806 ~ 4527738 (+) True AMCG00006445
TU137460 other downstream 647518 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 703504 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 703504 5080881 ~ 5098698 (+) False G109795

Expression Profile