RNA id: TU137307


Basic Information

Item Value
RNA id TU137307
length 1787
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G109656
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4314631 ~ 4316465 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATAATGCAACATTAAGACATTAAGCTTATAATTAAACTCTATGAAAGTCTTAATCactttataaaactgaaataattcacTGACACACGTAAGttacaaaatactgtttattgagGAGGGATAAAACAACAACCTAGTATAATACACTTCCGTGGGCAGTTTCCTGTTGTTCTTAAAATCATTCTgcaaacaaacaaaataattcacattCCATGAAAAGCCGAGGGGCTCTGGGCCTGACTGTGGCAGAGAGCATGCTGGGAACCCAGGGGTCGACTCAATCGCTGTACTTTACCCCACGTGAGCAGCGTGAGCCCAGCTGAGCTCTACTTGTCTGCGTCGTTTCTCCCATATTGTCATTTCTCCCTGAGAGAAAGACGCAGCCTTTGCTATGACCCAGAGCCAGCCGTGTTCCCGGAGAGACGACCAGCAGGTGTTACAGGCCTTTCTGCATCTCTCGTCACCAAGCGCACGGGAACACGCCACCAATTACATCAGTAAATCGACTAATTTAAGCAGTTTCACCATTCAGATACAATAAAAACTCTCTGGCCCTCTTAGCTTCAGTCTCTTCATGCACAGCTCAGAAGAAAGATACGTTTTAAAAGGAGTTTAAAAGGTTAAactagcatttaaaaaaatacatacatttcaattttccTGGAGAACTGAATAATTCAATTTTAGtaaatgcaattgaaaaaaaGGCATCTCATGGAGGTTTTACATACGATGCTCCCAACTGTCTGAGCTGTTCTGAATCAtgattgttctgtttttattggttCTTACACAGCGGTTCCCAACCCAGTGGGCCCACCAGCCTGGGGTCTGGCCCACTTTTTTAGGTTCTCGTTTTCATTAGACCAAGAGCATGAACACGGGTAAGAAGTGGGTCAACGTGGGCCAGAGCAGCCTGCCTCAGCTCTGACCCGGGCAGAGCGAGACTAAAGGCCCGGCAACTGACTCGCTTCTTGAAACTGCGGGGTGGGAGTGTGGACCTGCCCGGGCCTGGCAGCGTGTCCCAACCCGGGTGGGGGGTGCCAGCGTGAGAGGAGCAGTGGGCATGTCGGGTTCTCCAGCACAGCTAGGTTTGGTCCCCTTGGGTGTTAAAAGGAGAACATGCCAAGGCACCGGCATGATACTTTTAAACGAGCACAGTACCAAAACACGGCCTTCACAGACGATCAAAGTTCACACACAGatatctgtatatattgtatCATAGGTATTTATTATACACTTGATTCTACActtgttcttatgttttaataactTAGCAATGGTGCCCTACAGACAGACCTTTTTAaaaccttgtgtttttaattcatatcCACACAATGCACTTCAGCGCACAGCAACAGGAAAGTCTCGTTTCATTGAGGCCAGCAGTCTCTCAATCTGGGGTTGTAGGGTCTTCTAACCGGCAGGGTTCATAGGTCCTCAGAGTCAGGGCTCAGGTGTGCTCAATCttatctgtctgtgtgagatCAGTGGGAAAGGGCTGCCGAGAGAAAAACTCCAGTGTGGGACGCAGACCGGACGACAGCGCGGCTCCAAAAGGCACGAGTTCAACACCACCTTTTCTCCCATCTGGTGCAGGTGCCTACCTCTTTCTccggcctcctcctcctcgccctTTAGCCTCGGCCTTGAGCTCGAACCCAGGCCCGGTGAGGCAGTGGCAGTCCAGCTCGGCACTCTGCCGCAGGATGCCGGTGAGCAGAAATTCTGCGCTGACCACCGGTAGACCGGCGCGGAGGGCGGGCTGGCAGCGGGTGGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137227 lncRNA upstream 84147 4230234 ~ 4230484 (+) True G109597
TU137205 lncRNA upstream 145525 4168084 ~ 4169106 (+) True G109575
TU137202 lncRNA upstream 155440 4157736 ~ 4159191 (+) True G109573
TU137201 lncRNA upstream 157662 4156442 ~ 4156969 (+) True G109572
TU137200 lncRNA upstream 158425 4155964 ~ 4156206 (+) True G109571
TU137312 lncRNA downstream 12404 4328869 ~ 4329278 (+) True G109660
TU137314 lncRNA downstream 17858 4334323 ~ 4335450 (+) True G109662
TU137306 lncRNA downstream 57683 4374148 ~ 4377377 (+) True G109655
TU137383 lncRNA downstream 151926 4468391 ~ 4473008 (+) True G109713
TU137391 lncRNA downstream 202452 4518917 ~ 4521249 (+) True G109721
AMCG00006432 mRNA upstream 48388 4254334 ~ 4266243 (+) True AMCG00006432
AMCG00006424 mRNA upstream 124545 4187593 ~ 4190086 (+) True AMCG00006424
AMCG00006423 mRNA upstream 129321 4179050 ~ 4185310 (+) True AMCG00006423
AMCG00006413 mRNA upstream 146679 4160202 ~ 4167952 (+) True AMCG00006413
AMCG00006412 mRNA upstream 162940 4147704 ~ 4151691 (+) True AMCG00006412
AMCG00006433 mRNA downstream 35187 4351652 ~ 4360196 (+) True AMCG00006433
AMCG00006438 mRNA downstream 125496 4441961 ~ 4450469 (+) True AMCG00006438
AMCG00006446 mRNA downstream 172032 4488497 ~ 4496374 (+) True AMCG00006446
AMCG00006444 mRNA downstream 179941 4496406 ~ 4516083 (+) True AMCG00006444
AMCG00006445 mRNA downstream 208343 4524808 ~ 4525972 (+) False AMCG00006445
TU137203 other upstream 152658 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 158882 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 350635 3963597 ~ 3963996 (+) True G109538
TU137096 other upstream 451361 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 673970 3637743 ~ 3640661 (+) False AMCG00006387
TU137384 other downstream 160469 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 208341 4524806 ~ 4527738 (+) True AMCG00006445
TU137460 other downstream 708430 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 764416 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 764416 5080881 ~ 5098698 (+) False G109795

Expression Profile