RNA id: TU137312


Basic Information

Item Value
RNA id TU137312
length 410
lncRNA type inter_gene
GC content 0.70
exon number 1
gene id G109660
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4328869 ~ 4329278 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACATTCCCCTTCCCgtctttcccctcctcctcctcctcatccgaTTCGGGGACCAGAGAAAGCACAGGGCCCGGGGTCTTCTCCAGAGCCAAGGGCCGGACTTGGCGCCGGGGCTGGGATCGGACCCGGGGGGCGGAGCCGGGGGGCAGCGTCGGGGGCTCGCTCTTCTTCAGGAGGGTGTACTGGCAGGGCAGGTCGGCGAACACCAGGAGGTCTCCCTGGGACAGACTGTAGCGGACCTGGGGGGTGAGCTGGGCACGGCCGCGGCGCGTGCCATTCAGGCTGCCGCAATCCCACAGCAGGTGCTCCCCCTGGTGGACCTGGAGGACCGCGTGGCGCTTGGAGATGGAGCTGGCGGGGAGCGTCACCGCGCAGCCGGGCTCTCGTCCAATCACATTCTCCCCGGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137307 lncRNA upstream 12404 4314631 ~ 4316465 (+) True G109656
TU137227 lncRNA upstream 98385 4230234 ~ 4230484 (+) True G109597
TU137205 lncRNA upstream 159763 4168084 ~ 4169106 (+) True G109575
TU137202 lncRNA upstream 169678 4157736 ~ 4159191 (+) True G109573
TU137201 lncRNA upstream 171900 4156442 ~ 4156969 (+) True G109572
TU137314 lncRNA downstream 5045 4334323 ~ 4335450 (+) True G109662
TU137306 lncRNA downstream 44870 4374148 ~ 4377377 (+) True G109655
TU137383 lncRNA downstream 139113 4468391 ~ 4473008 (+) True G109713
TU137391 lncRNA downstream 189639 4518917 ~ 4521249 (+) True G109721
TU137446 lncRNA downstream 593854 4923132 ~ 4924794 (+) True G109767
AMCG00006432 mRNA upstream 62626 4254334 ~ 4266243 (+) True AMCG00006432
AMCG00006424 mRNA upstream 138783 4187593 ~ 4190086 (+) True AMCG00006424
AMCG00006423 mRNA upstream 143559 4179050 ~ 4185310 (+) True AMCG00006423
AMCG00006413 mRNA upstream 160917 4160202 ~ 4167952 (+) True AMCG00006413
AMCG00006412 mRNA upstream 177178 4147704 ~ 4151691 (+) True AMCG00006412
AMCG00006433 mRNA downstream 22374 4351652 ~ 4360196 (+) True AMCG00006433
AMCG00006438 mRNA downstream 112683 4441961 ~ 4450469 (+) True AMCG00006438
AMCG00006446 mRNA downstream 159219 4488497 ~ 4496374 (+) True AMCG00006446
AMCG00006444 mRNA downstream 167128 4496406 ~ 4516083 (+) True AMCG00006444
AMCG00006445 mRNA downstream 195530 4524808 ~ 4525972 (+) False AMCG00006445
TU137203 other upstream 166896 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 173120 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 364873 3963597 ~ 3963996 (+) True G109538
TU137096 other upstream 465599 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 688208 3637743 ~ 3640661 (+) False AMCG00006387
TU137384 other downstream 147656 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 195528 4524806 ~ 4527738 (+) True AMCG00006445
TU137460 other downstream 695617 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 751603 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 751603 5080881 ~ 5098698 (+) False G109795