RNA id: TU137350


Basic Information

Item Value
RNA id TU137350
length 1979
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G109692
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4344387 ~ 4349812 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCATATCCCAGCAGATAAGAGATTGAATCAAGAGTGCATTGGGAAATTAGAAATGCACCGCCGCTGTGAGGCAATCATCGCAGTATCTCATGATTCCCGCATGAAATGAACCGGGGGGACCGTTTCACACGTCTCAGATTGGCGCTTTGCTTTGTCTTTCAAACGGGTCCTATCCCCCCCACACCTGTGTTGAAAGAGGGAAGTCGCGGTTCCTGGTTTTAAAGGGGACACTTTCCCCAGATAAAAACCTCAAGAGGCAGAtgcacaggcacacaggaaTCACACCGAGGGTCGCGCCTGAGGCTCCGCAGAAACGCGCTCTTCACACGCAGGCCGGACACTCGACAAGAAGCCCAGTTTAATCCGCAATTCGCCGCTGTGGCGACTCGGGCTGCAGCCATGGATGAATGAACGCGTTACCGTTAAAGACGAGCACAAACATGGACGGACACGGACTGCATGCCGTGACTGGCCGCTCAGCTGCTTTCCTGCCCCTGTCCAGAGACGCAGCCGTGTTTACCAGCGTGCGGCTCACACGCCACTCCGCCCAGGACAAGCGCCCCATCCCGGCGATCGCACCGACACTCACCGGTAGCCGCCGAGGATCGTAAGGATTGCGGTCCCAGCGCAGCAGCACACcgctgaagaagaagaaaagcgCTACGGTGATTTGGACAGAGAAAGAGCAGAGATGACTTCATCGATTGATATCCCCCCATCTGTGACGAGGAGACATTGTAACCTGCGCTCTGCAATTACCCTGACAACAACACTGCCATTATCTCGACGTTTCAAAGACGCAGCTTCTTCCCAATGCGCACCCCCGCTGCTCGACAACTCTCCTCCCTTCTTCTCCTACAGCTGTTGATGCTATTccaacacacagagagagatggggatggagagagagagggaagagcaATCAAGCCCATTTCCTGAATTGTGCTGAATTTCCACATGAGTACAGGGAAACGATCATTAGAAAGTCACACACAGACCGTCCTACTACATTATATATCTGAAGCACCCGACTGTTGGTCTAGATCTCAGGATTTCAGCTGTGATTCTGTTTTCCCATTGTAACCCTGTGAACATCAAACATGAACAGTTGTATCTCATCGATCTCCTCAATGAATTACTagctcatattattattattattattattattattattattattattattgcaacaGTTCTATGATATTTAGTCTATTATTTGTGGCTTCATGCACTTCATTGGATCTGGGTATTCGAATAACTGATTTAGTAGGacatctgtgttttaaattgaaaacaaaccgAAACAGATGCACGGTCATTTAAGACAAGCAGGCGAGAGCAATGCCTCGTCCCTGTGCAGGTGACGTCACATGTGACCGCTGTGCAGGCGGCTTGCTGTGGCCGCATTGTGATAATACCGGTACAATTATGCAGTTTGTCTTGGGTGACGACATGTGTAAGTCGCTCGATGTCTGGGCTTGTTGTATGTGTAACTGTGTGCTACGAgcttaaatacagaaataagtTCAACCAAAAGAACGGATAGGCTACACCCATAACATAAGTCGTGTCTGACCCATTTGCTCACATAATACCATTGTAACTACTTGAACTGCACCATTCCACATTTGCATGAGTCAAATTGCCTATTCTGTATAACTTAGTATGAAACCGATAACACGTCGCTCCAGAATACCATTTAAGAAGACTAAGTGTACATGTTGAAAACTGTCAAAATGCAGAGTGGTTTATGTTTAGTTGTGTTCGTGCAGACTATTGTATCGTGGCATATATGTTccaatgaagaaaaatacatgagcACAAAAATAAACCCCACGCTGTGACACATTTAGAAATGCCcgggtttttattttcatctctttctctgttCATTTTCTCTCAGTATTGTGCAGTGCCGTTTCTCTGCAAAGCAAAGAGTCATGCGCGTACACAAGCTCCTGCGGTGAGGTCATCG

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137341 lncRNA downstream 32436 4308173 ~ 4311951 (-) True G109689
TU137298 lncRNA downstream 68001 4275329 ~ 4276386 (-) False AMCG00006429
TU137257 lncRNA downstream 75917 4266827 ~ 4268470 (-) True G109616
TU137280 lncRNA downstream 175275 4168050 ~ 4169112 (-) False AMCG00006415
TU137279 lncRNA downstream 177148 4166951 ~ 4167239 (-) True G109635
TU137406 lncRNA upstream 164498 4514310 ~ 4515575 (-) True G109735
TU137408 lncRNA upstream 166125 4515937 ~ 4521369 (-) True G109736
TU137407 lncRNA upstream 166243 4516055 ~ 4521369 (-) False G109736
TU137436 lncRNA upstream 397158 4746970 ~ 4747234 (-) True G109761
TU137457 lncRNA upstream 621052 4970864 ~ 4971188 (-) True G109778
AMCG00006437 mRNA downstream 8205 4335672 ~ 4336182 (-) True AMCG00006437
AMCG00006435 mRNA downstream 13469 4314722 ~ 4330918 (-) True AMCG00006435
AMCG00006429 mRNA downstream 67232 4270416 ~ 4277155 (-) True AMCG00006429
AMCG00006428 mRNA downstream 92664 4245185 ~ 4251723 (-) True AMCG00006428
AMCG00006427 mRNA downstream 101828 4233664 ~ 4242559 (-) True AMCG00006427
AMCG00006434 mRNA upstream 17438 4367250 ~ 4368596 (-) True AMCG00006434
AMCG00006436 mRNA upstream 26869 4376681 ~ 4387311 (-) True AMCG00006436
AMCG00006440 mRNA upstream 71217 4421029 ~ 4430984 (-) True AMCG00006440
AMCG00006439 mRNA upstream 89988 4439800 ~ 4441434 (-) True AMCG00006439
AMCG00006441 mRNA upstream 105069 4454881 ~ 4476647 (-) True AMCG00006441
TU137277 other downstream 178787 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 2014396 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2214132 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2320244 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2462550 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1664292 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2435501 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2728577 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4372576 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4438006 8787818 ~ 8794062 (-) True G110520

Expression Profile