RNA id: TU137391


Basic Information

Item Value
RNA id TU137391
length 2333
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G109721
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4518917 ~ 4521249 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAGAGGCAAGGGGACTTTAGTGCAGTCCTCGCCTGCTGTGCCTCGGGGCTAGATGCCACCCCCTGTGCGCGAGACGCTTGGCTTGTCCTCCCGCTGGCCTTTAGTGCGACGGTCCCGCGGCGTCTCTCTGTTCAGCCCTGGAGCCTGCTTGAATTTctggtgtgtgttttgctttcaacATTTCGTCAGAGTGGGAAGGGGGGCGGTGTctggtttttaattatttgcaaagATGAGCCTTAAGTagatcatcattataataattctgtattatacttgagtgtttttttgttttcctgtctcaACCTGATGGGTCTAATTCGGTGGTTCtcaaccctagtcctggaggtgtccctaccctgctggttttgatTCCAattgagctcttaattacttaattggaccttaaaggtagggtatgcaatcttatccagaaacattttttgttatactggttgaaagtctcatCACAttctgatagcaatcaatactttaagtggtctaaatgtaaatatatatatatatatatatatatatcttctgtggaagggacaggactaaaaaagggtcgaccaatcattgcattcggtctgAAGGTAAtcataggatgtccttcctgtctgtcagtctATATTTGCGTACCGCCGCGaaacttgttcgcgcagacaatcacacgtcatcagcgcgggaaccttgactgtgcagagcgagcacgagaatggaaggcgagccgcagctactattaaaaaaaacattaaaaccgtaaataagatgtttatgctcggtattattgtaatgtctaacctgtgaatgagacatgagGTAACCTGAACCCGCTGCGATGGATTCCgcccacacgtctctcctcctggcgctgagactccgctctgtgtgcacatgtgtgatggagggggcgtggctttggagacgctgTGAAGCgagggctctatgctttcaaaacaagctgctactgctgcctctcaggattgcacaCCCTGCTTACTTGTGTtctgtaactgataaaaaagttggttccttaataagataagttcTACAAtgttatacaatgttatactaaacttaaaacccctactgtttaaaatcatgaaaaggctctgatttatgaaatgattcattcaattaagggttcaattaagtaattgagagctcggctggaacgaaaaccagcagggcaggggctcctccagggaCAGGGTAGGGAACCACTGGTCTAACTGCTCGATCGACAGTATATAAAATAGGAAAACGCACATCGGGTATGTTCAGTGCTGGATAGGAAGAGAATGTGGACGTGAACTTGTTTTACAGTCTGTATCTTCCGGTCGTTGTCCACATGCCGCCAGCGAGGGGGAACAGGAACACACCTGCAGTTGGAGACTAGAGACCCCAGTTTCCTTGTGTTCAGCGATGGACGAGATCCTCAATTAGTAAACCTGTTATTGGGATGTTGCTTTATAAACGGGCCGCACTGTTCGTGGCTGCTTCAGTCTCTGCTTTCTACCAGGATATGGCCATTGACCTGTAACAGGACAGTCGAGGGGTTTCACGTACACCACTTCACATGCAAACGGCTGCAGCCATAGGAAGGGGGTGGGGACAACTCTATGCCTTCTTTTGTACTTGTGTAACAGATGTAAATAAAGCTGACCAAACTTTGTAGAGGATAGTTTATACGGCATCATCTGTTCCTGCTGATTCTCAGTgaactggtgtgtgtgtttatttttttatgtttgttttctcttcccgATTGACaccttttcaatattatttatggCACCTTTAACAAACCCATGTGCTGGTTTGTCATGGATTGTGTTAACTGTTCTTGCACAAATACCGATTTGCACCCGCCACGTTGTGCTTTCCTGCGACGGATACAAAATACGAAACATAAAAACTTGGAGCGTGAGGAAAGAACTTTATTTTTgcgtttatttttgtgtattgcTATATTGTACGCTGGTTTCCTTTCGATTCTGTTGTGTTTAGGAACACTAAGAAACATCTGGGCACTTGCGAAAAAGtagatttgcttttgttttggtttcctaTTCGCAGTATCAGGTAGCACCTCCATCCCACCCTCTGGACGAGAGCAGACTGTGTCCGCAGTCGGTGTAAATATTCAGGATGTATGGCTTACTGAagggttacaaaaaaaaaaaatacagagagagaacaaacgATTGAATCGATACTGCCATGGTTCGGCCCCGACCGCAGAGCCCTCCTCTGACTGTGAGGggatcttttttgttttgttttgtatctggctttgtaaataaaataatttatatgttTGTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137383 lncRNA upstream 45909 4468391 ~ 4473008 (+) True G109713
TU137306 lncRNA upstream 141540 4374148 ~ 4377377 (+) True G109655
TU137314 lncRNA upstream 183467 4334323 ~ 4335450 (+) True G109662
TU137312 lncRNA upstream 189639 4328869 ~ 4329278 (+) True G109660
TU137307 lncRNA upstream 202452 4314631 ~ 4316465 (+) True G109656
TU137446 lncRNA downstream 401883 4923132 ~ 4924794 (+) True G109767
TU137458 lncRNA downstream 496840 5018089 ~ 5020403 (+) True G109779
TU137459 lncRNA downstream 500047 5021296 ~ 5022178 (+) True G109780
TU137465 lncRNA downstream 523167 5044416 ~ 5044633 (+) True G109786
TU137473 lncRNA downstream 577747 5098996 ~ 5106948 (+) False AMCG00006460
AMCG00006444 mRNA upstream 2834 4496406 ~ 4516083 (+) True AMCG00006444
AMCG00006446 mRNA upstream 22543 4488497 ~ 4496374 (+) True AMCG00006446
AMCG00006438 mRNA upstream 68448 4441961 ~ 4450469 (+) True AMCG00006438
AMCG00006433 mRNA upstream 158721 4351652 ~ 4360196 (+) True AMCG00006433
AMCG00006432 mRNA upstream 252674 4254334 ~ 4266243 (+) True AMCG00006432
AMCG00006445 mRNA downstream 3559 4524808 ~ 4525972 (+) False AMCG00006445
AMCG00006442 mRNA downstream 20863 4542112 ~ 4562075 (+) True AMCG00006442
AMCG00006443 mRNA downstream 49275 4570524 ~ 4571515 (+) True AMCG00006443
AMCG00006450 mRNA downstream 93943 4615192 ~ 4632996 (+) True AMCG00006450
AMCG00006449 mRNA downstream 142253 4663502 ~ 4678336 (+) True AMCG00006449
TU137384 other upstream 41347 4476934 ~ 4477570 (+) True G109714
TU137203 other upstream 356944 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 363168 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 554921 3963597 ~ 3963996 (+) True G109538
TU137096 other upstream 655647 3859273 ~ 3863270 (+) True AMCG00006393
TU137394 other downstream 3557 4524806 ~ 4527738 (+) True AMCG00006445
TU137460 other downstream 503646 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 559632 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 559632 5080881 ~ 5098698 (+) False G109795
TU137492 other downstream 606108 5127357 ~ 5128829 (+) False AMCG00006459

Expression Profile