RNA id: TU137406


Basic Information

Item Value
RNA id TU137406
length 1266
lncRNA type inter_gene
GC content 0.64
exon number 1
gene id G109735
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4514310 ~ 4515575 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagagagagagagcccctGTGATAGAAATAGAGAGATGATTTGGTATCAGGCAGGCTAGCTTAAAACTTGACCAGTACACTGATAAACAAACAGACTGTAAAATGATATTGGGTGCAAGAGGaatgtgtctctctccctctccaccccccctccctctctctctctctccccctccctctctccctctgctggcGTGAAAGGAAACAGATGGCAGAGACAATGGGAGACTGTTTGTCACTGCACCTAAAGCAAAGCTCTCCTAATGAGGGCACGGCGCACTCTGGCACGTATCCTTTTTAGACGAGGGGGCTGACTCTTTCTCAGATTCCTTCTTGCGTTCCAGCTACTGAAACAAACAATCGGGAGAAGACTACACACCTGTCTGGAGAGGGTGCTGTTGGGGGACCCCGGCACGGCGGAGAGAAGGCTGGCGGTGCTCTTGCGGTGAACACTGTTCACGCCGGTCACTTTGGTCACTTTGCTGGGCTTGCCACTGGAGCCGGCGTTCTTGCGTTTCTTCCCGTCCGCCTTCCCGTAGGCGAGCGTCACACCGGACAGGGTGTTGTGCGCAGATAGGGCGTGGTCCCCGGCCAGGTGCGCCAGTGGGGGCATGAGCAGAGCCGGGTCCGTGCTGCCGCCGCCCCCCTCGGTGCCCACGCGCTTCACAGGGTCCGCCGAGCTGCCCGACAGAACAGCCCGTCCTGAGGGCTCAGATTTGGCACTAAGTGGGGTCGTCCCGTTGTTGCTGCCGCCACGAGAGTTGAGCGGGGCGCCCGGCGCCAGGACACAGTTCCTCCGGTGAGCCCCGGCGTACGACGACGCAGAGGAGGACTGCAGTGGGGCGGgggcgggaggaggaggaagaggcgGGGGCTTCTTCTTCTTGGCCGCGGCGCTGCCTCCCCGCGGAGGCAGGTCCTTCACTCTCGGCGTCTTGCTGGTTTTGGTCCGGGGCTGCGACCGGGTGGGGGCGCTCTTAAAGGGCGGGTCCAGGACGTTGAAGGCTGCCCCGCCGTGGGGGAAGGCCGCGGAGTAGGGAGACGTCACGGGGCTGCCGTCCGCCCCCCCCATGCTGGTGGCCGAGGATAGCAGGGAGTGGGGCACCGGGTAGGGGGGGGTGccggaggaagaggaggacagGTAGACGGCGCCGGGGCCACCCAGGGCCTGCAGGACAGGGAGGGCGGTTGCCAGCTGGGCTGCGGGGGACGACAGGGGGCTCTCTGCTGCGGGGGGGATCTTCCTGCAACACAGAGAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137350 lncRNA downstream 164498 4344387 ~ 4349812 (-) True G109692
TU137341 lncRNA downstream 202359 4308173 ~ 4311951 (-) True G109689
TU137298 lncRNA downstream 237924 4275329 ~ 4276386 (-) False AMCG00006429
TU137257 lncRNA downstream 245840 4266827 ~ 4268470 (-) True G109616
TU137280 lncRNA downstream 345198 4168050 ~ 4169112 (-) False AMCG00006415
TU137408 lncRNA upstream 362 4515937 ~ 4521369 (-) True G109736
TU137407 lncRNA upstream 480 4516055 ~ 4521369 (-) False G109736
TU137436 lncRNA upstream 231395 4746970 ~ 4747234 (-) True G109761
TU137457 lncRNA upstream 455289 4970864 ~ 4971188 (-) True G109778
TU137461 lncRNA upstream 504462 5020037 ~ 5020675 (-) True G109782
AMCG00006447 mRNA downstream 21780 4484214 ~ 4492530 (-) True AMCG00006447
AMCG00006448 mRNA downstream 30430 4483234 ~ 4483880 (-) True AMCG00006448
AMCG00006441 mRNA downstream 37663 4454881 ~ 4476647 (-) True AMCG00006441
AMCG00006439 mRNA downstream 72876 4439800 ~ 4441434 (-) True AMCG00006439
AMCG00006440 mRNA downstream 83326 4421029 ~ 4430984 (-) True AMCG00006440
AMCG00006457 mRNA upstream 502220 5017795 ~ 5051191 (-) True AMCG00006457
AMCG00006456 mRNA upstream 547886 5063461 ~ 5067740 (-) True AMCG00006456
AMCG00006463 mRNA upstream 595587 5111162 ~ 5114090 (-) True AMCG00006463
AMCG00006462 mRNA upstream 600141 5115716 ~ 5123628 (-) True AMCG00006462
AMCG00006470 mRNA upstream 834629 5350204 ~ 5390268 (-) True AMCG00006470
TU137277 other downstream 348710 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 2184319 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2384055 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2490167 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2632473 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1498529 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2269738 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2562814 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4206813 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4272243 8787818 ~ 8794062 (-) True G110520

Expression Profile