RNA id: TU137408


Basic Information

Item Value
RNA id TU137408
length 5433
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G109736
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4515937 ~ 4521369 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGCCTCTCTCGGTGTAAGCTGCCCTTTCTTCCGAGGAGCTTCAGGgatgtagtaataataaaaaaattccAGTAATTCATCTTCCCCTTTCAAATGAAGAGACCAGACGCTGCGTTTTCTTACAaacatataaattattttatttacaaagccagatacaaaacaaaacaaaaaagatccCCTCACAGTCAGAGGAGGGCTCTGCGGTCGGGGCCGAACCATGGCAGTATCGATTCAATcgtttgttctctctctgtattttttttttttgtaaccctTCAGTAAGCCATACATCCTGAATATTTACACCGACTGCGGACACAGTCTGCTCTCGTCCAGAGGGTGGGATGGAGGTGCTACCTGATACTGCGAAtaggaaaccaaaacaaaagcaaatctaCTTTTTCGCAAGTGCCCAGATGTTTCTTAGTGTTCCTAAACACAACAGAATCGAAAGGAAACCAGCGTACAATATAgcaatacacaaaaataaacgcAAAAATAAAGTTCTTTCCTCACGCTCCAAGTTTTTATGTTTCGTATTTTGTATCCGTCGCAGGAAAGCACAACGTGGCGGGTGCAAATCGGTATTTGTGCAAGAACAGTTAACACAATCCATGACAAACCAGCACATGGGTTTGTTAAAGGTGccataaataatattgaaaaggtGTCAATcgggaagagaaaacaaacataaaaaaataaacacacacaccagttcACTGAGAATCAGCAGGAACAGATGATGCCGTATAAACTATCCTCTACAAAGTTTGGTCAGCTTTATTTACATCTGTTACACAAGTACAAAAGAAGGCATAGAGTTGTCCCCACCCCCTTCCTATGGCTGCAGCCGTTTGCATGTGAAGTGGTGTACGTGAAACCCCTCGACTGTCCTGTTACAGGTCAATGGCCATATCCTGGTAGAAAGCAGAGACTGAAGCAGCCACGAACAGTGCGGCCCGTTTATAAAGCAACATCCCAATAACAGGTTTACTAATTGAGGATCTCGTCCATCGCTGAACACAAGGAAACTGGGGTCTCTAGTCTCCAACTGCAGGTGTGTTCCTGTTCCCCCTCGCTGGCGGCATGTGGACAACGACCGGAAGATACAGACTGTAAAACAAGTTCACGTCCACATTCTCTTCCTATCCAGCACTGAACATACCCGATGTGCGTTTTCCTATTTTATATACTGTCGATCGAGCAGTTAGACCAGTGGTTCCCTACCCTGtccctggaggagcccctgccctgctggttttcgttccagccgagctctcaattacttaattgaacccttaattgaatgaatcatttcataaatcagagccttttcatgattttaaacagtaggggttttaagtttagtataacattgtataacaTTGTAgaacttatcttattaaggaaccaacttttttatcagttacagaACACAAGTAAGCAGGGtgtgcaatcctgagaggcagcagtagcagcttgttttgaaagcatagagccctcGCTTCAcagcgtctccaaagccacgccccctccatcacacatgtgcacacagagcggagtctcagcgccaggaggagagacgtgtgggcGGAATCCATCGCAGCGGGTTCAGGTTACctcatgtctcattcacaggttagacattacaataataccgagcataaacatcttatttacggttttaatgttttttttaatagtagctgcggctcgccttccattctcgtgctcgctctgcacagtcaaggttcccgcgctgatgacgtgtgattgtctgcgcgaacaagtttCGCGGCGGTACGCAAATATagactgacagacaggaaggacatcctatgaTTACCTTcagaccgaatgcaatgattggtcgacccttttttagtcctgtcccttccacagaagatatatatatatatatatatatatatttacatttagaccacttaaagtattgattgctatcagaaTGTGatgagactttcaaccagtataacaaaaaatgtttctggataagattgcataccctacctttaaggtccaattaagtaattaagagctcaatTGGAatcaaaaccagcagggtagggacacctccaggactagggttgaGAACCACCGAATTAGACCCATCAGGTtgagacaggaaaacaaaaaaacactcaagtataatacagaattattataatgatgatctACTTAAGGCTCATctttgcaaataattaaaaaccagACACCGCCCCCCTTCCCACTCTGACGAAATgttgaaagcaaaacacacaccagAAATTCAAGCAGGCTCCAGGGCTGAACAGAGAGACGCCGCGGGACCGTCGCACTAAAGGCCAGCGGGAGGACAAGCCAAGCGTCTCGCGCACAGGGGGTGGCATCTAGCCCCGAGGCACAGCAGGCGAGGACTGCACTAAAGTCCCCTTGCCTCTTCAGCACCTCTGTGCGGATTAAGCGATTAAAACTGGTGCGAGAcacatggatttaaaaaaacaacgtAAATTTGATAAATccataaatgttattaaaatacctGTATGGTGTAAAACATTACATGCACTGAATCCAccactcccctcccccaccccttctCCCACAAACAGACAACGGAAATAACGAATCCTGTACATTTTGAGGTCATTTCATAGAATTGCTTTGGCCACACATTTCAATATGTTGAACAAAGACCgccaaagaaaacaatgtacaagGCTCAATTCATATCTATAAGATACACCTGTCATATCTATAAGATACATCTGTACAAGAGGTAAGGATGACTGGAGAACCGGAGGGCATTGTGGTGATGTAAGGCAGGGGTATATCTGTACACGCCGACAAGGAAGAGAACCAGGAAATACACTTTCTGTTGAATGCCAGCATCTTAACATGTGAGACGAGGCCACGTTTCAGGTAGAAAAAGCAACGAGGGTTTTCAAGTTGGTTTCAAAGTGACGCTCCctaaggattttaaaaataacatatccaaaccaaaaaaagtcCCGGACCACCTGTCAAACGAGCTCACCCAGTGAGACGTTCCCCTCGCAGTCTGTGGTTGCATAAAATACTTCCAGACATCACATAACagctcttttctttttaaattctaGACAGAATGGTTTCAGCCCTCTCCTAACACACATTAACATCAATTTTAACGCCTTCAATAAACCTCTAACTCGGTGCAAACATGTGGATTGATATCGGTCTTCTTATTATCGAATTAGAATGCGTAATTAGAATGGTTGCTGATTGGGACTTGACTACTGGGGAGGCTCAGTAATAGTTTTCCCCTAATAAAGGGTCTCCACCTATAGTCCTGgagggccgcagtgtctgctggtttgtgttcctcTATTAGTTGTGTAGTTGATGCCTAACAATGTgttgattattcaaaacactgaacccacagaacatttcagagtctggagagtgttcaattaatccagttaattgtttaattagagcaattaaggagccaagagctgggctggaacaaaactcGGCAGACAcggcggccccccaggactggagtctgacacccctgctctaaTACATTTGCTACTAACCGTAGGGCAACGAGTAGACAGAGTGGCTTTACACTTCCGGGACACGCAAACCCAGACCTGCCCTTCCTTCTGCATAGAGCCATGAACAGCAAATGGAATCAATACTAATAAGAAACACTGTGTCCTATTTAAGCCCACAAGTAGGTGATTCGGTCTTGAAGGCAAACTAATTGGATACTGAGGGTCAGAGAGAGAATATTTTTGCCCAGATCCTGAAGAAAGCCAGACTTTAAACTGATCATCTCTATTTTCCAGCTGCTGAAACGGAAGCGAGGCACCTGAATTTAAAGGCTTCTATAtagtgtaaaacaaaactaaaatataacacaaacaaaacaaacaaacaaaaacacatctttgtTATCAATACTGTCTGGAACACGCCTGTAGTTCAACATGCTTCCatagagagggggagggagctgtGCGGACAGACACTGGTCtattcaccccccaccccctcaccgCTGCCAACCGAACTTCAGCcacaaaatatcaataaaataaatatcaataaataagtgCCAGAAATAGGACAAAGTGCACTGAAGCTGACGGACCTGTCCGAGGTCGCGCAACAGTCGTGTTTATACGGGGGAAGGAAGATCGAAGCTTTTATCAGATCGTTGGAGGTGCCTCCAGAGTTGAAAGTGTATCAGAAGTACGAAAGATAACTCAGTAAAGAAgcctttttaaagaaaacctcACTGAAACATTCAGCCGCGGAGagcatctctctctcacgcttCAGTGCCGTCAGCGTGCGTCTTGGACGTCCACAGAAGAGGGGCCAATTCAGAGCAAACATGTGATTCAGAACCACGATGGAACGATCTCCTACACTTACACAAAATAACTCGCCGTCCTTCACAGAACCCAGTTTCAAAATAAGTTCCAAAAAGAATCCCTAAACCCTtgtatttcagaaaacattaaaataaatatatagatatagatatataactGAACaagaccaaaaaataaaactgtgcaaaagtaataaagatatgtacacatttgttCATCCGTAGGAACTGTATAGTAACACTTTCagatcttaaaaaataaaataaaaatataatctctgcTCCACTGCTGTAACGTAACTTTCCCCGGCTCTACTCGCAGGGTTTCggtaaattataaattattacaaaaacgAACACTATAAAAACTCTTCCTCGCACGTGATAAGTGTTAGCCTCACGTCTGAATGCATTGCAATGTCTATTCTTCCCCTGCAAACCCCGACTGaatgaagatgtttttttgtgatcGTCAACAGTAATAGATTCCCTTCAATTGCTTGTTCCTCTGGAGGTGTTAGGAAACCTGCAGGTAAGTGCACTTTAACACTGTTTGTGTCGAGCGTTGGCGAGGGAGCCGCGGTCGACTGACGGAGACACACGGCCATCACGTGTGCAACAGAATAACGACGACAGGCCACCGACAAAATACAAGACTACACAACAGGGCCAACTGCTGTACCATCCTCCCTATGAACGCATCCACCACCTTCTGGACTAAACAGAAACCAGACCTCAAAACACGAGAGCGTACGCCGAGTACATCGACGCCGCTGCGACGCTTGCATCTTTAAAGTGTCATCCACGGGTCCGGTACTTCATCAGGGAGCACATTCTAGTGTCAGTCATTGGGATGCCCCCCCTTCCAATCTGTGGACTGTAAACAACTCACGCTTGCCGGGCCCGTCTGGCTCGGCCCTGGGGACCCTCCCTCGGGTTCCCCCCCCCCGCCTCGAACCCCAGATTGCCGTCTCCACTCCCGGCAGCTCCTCCGATCCCTCGCTGGCCCTCCTTCAGTGATGGACCTTAGGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137406 lncRNA downstream 362 4514310 ~ 4515575 (-) True G109735
TU137350 lncRNA downstream 166125 4344387 ~ 4349812 (-) True G109692
TU137341 lncRNA downstream 203986 4308173 ~ 4311951 (-) True G109689
TU137298 lncRNA downstream 239551 4275329 ~ 4276386 (-) False AMCG00006429
TU137257 lncRNA downstream 247467 4266827 ~ 4268470 (-) True G109616
TU137436 lncRNA upstream 225601 4746970 ~ 4747234 (-) True G109761
TU137457 lncRNA upstream 449495 4970864 ~ 4971188 (-) True G109778
TU137461 lncRNA upstream 498668 5020037 ~ 5020675 (-) True G109782
TU137499 lncRNA upstream 615149 5136518 ~ 5136744 (-) True G109815
TU137574 lncRNA upstream 824314 5345683 ~ 5347227 (-) True G109875
AMCG00006447 mRNA downstream 23407 4484214 ~ 4492530 (-) True AMCG00006447
AMCG00006448 mRNA downstream 32057 4483234 ~ 4483880 (-) True AMCG00006448
AMCG00006441 mRNA downstream 39290 4454881 ~ 4476647 (-) True AMCG00006441
AMCG00006439 mRNA downstream 74503 4439800 ~ 4441434 (-) True AMCG00006439
AMCG00006440 mRNA downstream 84953 4421029 ~ 4430984 (-) True AMCG00006440
AMCG00006457 mRNA upstream 496426 5017795 ~ 5051191 (-) True AMCG00006457
AMCG00006456 mRNA upstream 542092 5063461 ~ 5067740 (-) True AMCG00006456
AMCG00006463 mRNA upstream 589793 5111162 ~ 5114090 (-) True AMCG00006463
AMCG00006462 mRNA upstream 594347 5115716 ~ 5123628 (-) True AMCG00006462
AMCG00006470 mRNA upstream 828835 5350204 ~ 5390268 (-) True AMCG00006470
TU137277 other downstream 350337 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 2185946 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2385682 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2491794 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 2634100 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 1492735 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 2263944 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2557020 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 4201019 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 4266449 8787818 ~ 8794062 (-) True G110520

Expression Profile