RNA id: TU137446


Basic Information

Item Value
RNA id TU137446
length 330
lncRNA type intronic
GC content 0.48
exon number 2
gene id G109767
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4923132 ~ 4924794 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgtctctagagcagcgatatctttcttgaagtgtggag

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137391 lncRNA upstream 401883 4518917 ~ 4521249 (+) True G109721
TU137383 lncRNA upstream 450124 4468391 ~ 4473008 (+) True G109713
TU137306 lncRNA upstream 545755 4374148 ~ 4377377 (+) True G109655
TU137314 lncRNA upstream 587682 4334323 ~ 4335450 (+) True G109662
TU137312 lncRNA upstream 593854 4328869 ~ 4329278 (+) True G109660
TU137458 lncRNA downstream 93295 5018089 ~ 5020403 (+) True G109779
TU137459 lncRNA downstream 96502 5021296 ~ 5022178 (+) True G109780
TU137465 lncRNA downstream 119622 5044416 ~ 5044633 (+) True G109786
TU137473 lncRNA downstream 174202 5098996 ~ 5106948 (+) False AMCG00006460
TU137535 lncRNA downstream 427662 5352456 ~ 5353170 (+) True G109837
AMCG00006451 mRNA upstream 216695 4699666 ~ 4706437 (+) True AMCG00006451
AMCG00006449 mRNA upstream 244796 4663502 ~ 4678336 (+) True AMCG00006449
AMCG00006450 mRNA upstream 290136 4615192 ~ 4632996 (+) True AMCG00006450
AMCG00006443 mRNA upstream 351617 4570524 ~ 4571515 (+) True AMCG00006443
AMCG00006442 mRNA upstream 361057 4542112 ~ 4562075 (+) True AMCG00006442
AMCG00006454 mRNA downstream 2049 4926843 ~ 4930909 (+) True AMCG00006454
AMCG00006452 mRNA downstream 36412 4961206 ~ 4968033 (+) True AMCG00006452
AMCG00006455 mRNA downstream 90852 5015646 ~ 5016686 (+) True AMCG00006455
AMCG00006461 mRNA downstream 154956 5079750 ~ 5090677 (+) True AMCG00006461
AMCG00006460 mRNA downstream 169477 5094271 ~ 5107022 (+) True AMCG00006460
TU137394 other upstream 395394 4524806 ~ 4527738 (+) True AMCG00006445
TU137384 other upstream 445562 4476934 ~ 4477570 (+) True G109714
TU137203 other upstream 761159 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 767383 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 959136 3963597 ~ 3963996 (+) True G109538
TU137460 other downstream 100101 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 156087 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 156087 5080881 ~ 5098698 (+) False G109795
TU137492 other downstream 202563 5127357 ~ 5128829 (+) False AMCG00006459
TU137762 other downstream 1054268 5979062 ~ 5982909 (+) True G110023

Expression Profile