RNA id: TU137458


Basic Information

Item Value
RNA id TU137458
length 2315
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G109779
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5018089 ~ 5020403 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgttttaacatttttcctGGCAGtctatttttatcttttatttttttatccattttTTGTATAACTACTTGTTTGTACTGTTTGAGTGACACCAATGCCTTCAAATGCTTTCCAAAAATGAAAGTAGCATAGCAGAAgaaaagcacacatttttgtAACAGTGAGAATGGCTCAAACTATTATTAgtttgggaaaacaaacaaacacaaatccactactgatttattttggtttggtaTCAGTATAGCATTGATGATtgcaactgaatttaccaacgCCAATTGATATCTGTTCGGTATGCTTCcaatttctcaaaataattatatcccTACAGGCTTTAATTTCATATCCAAATATACTGCATGCATTGTGCTATATTTACTTTCTTGATTAGAAAAACCCTTTTAAGGCATTTTTAAACTGGGCTTTTATAAGACTGAATCTCAAAATTAGTACAAATATTTCATTGACTTTTAACAGTACTTTATGTGTTCAGAAACCTCAAAACCTCCTCAAAGCGTATGAGATCAAATTTGATTTTCAGGATTTCATTGTTGAACCACTCTCTCTTTTAAACAACAGAGCTcagtttaatttgcatgttcaaaatgaaagacaaaGCTTATTAATCTGCTGTTTGtacagttttgcttttgtgtgtgttacttCATGTAAGGCCAGATGCagttttgcatgttttgcagGGCAGGGCAATGGATGCAAACAGCAGGGAGGTAATTTGCAGTCAAAGACAAAAGTATTCAGTTTCCTACAGAAACTATGCAAACTAACTGGAAGAAAAAGTTAACACTTCACcttaaatattgatttcaaCCATTTAAAACTAATATCCTATATTTACAAAGGCATTTTCTGTTAGTAATTGCCATTTAAACAGTGACAAATGTCCATAGAGTGTATAAGAGATTGTGTATAACAAGATTAATCAGGCAGactgaaaattattatttatttatttatgtatttattggcagaaaGTTGTAGTTCAAGGCtagaaaataaagatataaagtaaacaaagaagCTGGAAGTTATGTAAAGATACTTGGCATCCATAGCAGTGCCAGATCAGTTACTGTACTGAGAAATAAAGATGAAGTACCATTTAATATGATAGATCAAGCAATGTGCATgttaacacaatacacaaactGGTTCAAAGGTCCAAAATTAAAACCTTGAGGAACCAGTCAATTATTCAGCAGCAAACGAAATTTCACTTTGTAGCAGAACAAAGATTTCCAAAGAGACGGATCTGAAATGAGAGCTAGTAAGTCCTAGGACAACATCCTACGTTGTGGTATGTCAGAACCAAAGTTGACATCAACACAAAGGCCAAATGCCTGCAACGAATGGTTATTGTTGTGGTTACTGTTGAGCGTTGTGCTGGTTCCTTGATGATGTGGATATATTTAACTTGTGGGGCATGATATCTGAAGGAAACTGCTTCAAAATCTCCAGTCCATCTGCTGACTGAAACAATACCGATACGTCACAAGCTTATCAGAGCAGCCATGACAGCGACTCAAAGGACGCAGTCTCCCCAACGCAGCTCCTAACTGACCTTTGGCATCAGCTGATCGGATTCCggttaaaatatattgcagaggGAAGTGAAGGCAGCTGGAAAGCATCATAAACTGAATCAATAAAAGGCCTCTTGTGCCGGAgaatggaaatacaaataaacattgacTCACTGGACAGATGTTGACAAGTCTTCCAAAGTGACGCAACCTTTGCATGCTGAAGTAGAAGCCAAAGTACACAATGCGTACTTGCAGTGCATGTGAGCACTATTGTGTGCATGCATGACATTGTTCTTTTCcagtgtgcttttatttttaatacattttaatatgatgcAGATTTCGTCCCCCCTTTCAAATGAATATAAcaatgcagttttaatttttgactttatttaattttgcataaaAAAGCATGACTTTGCACCGTGGTCTAATGTCCAAACTTCTTTCAAAGGTTTGGATAACAACAGGCATTTACTAGACAATGATACCACTTAAGATTCTCCAAAACTACATTAATTAAGCACTTAATCGGCTTTGAAAACAAACCTAAACGCCCAGAGGTACTTTGAGCATATCTTGATTGTGTGTTGGTGTATGGGTAAACCAAAGGAAGATATtagtagaaaaaatatttaaaataaaaataataataatgttttgtattccACATGAgacagtaaatgtaaataacaacaataaaaagcaataagtCGTATGGCACTACATATTCTATTTATTGTTACAAATAATGCTATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137446 lncRNA upstream 93295 4923132 ~ 4924794 (+) True G109767
TU137391 lncRNA upstream 496840 4518917 ~ 4521249 (+) True G109721
TU137383 lncRNA upstream 545081 4468391 ~ 4473008 (+) True G109713
TU137306 lncRNA upstream 640712 4374148 ~ 4377377 (+) True G109655
TU137314 lncRNA upstream 682639 4334323 ~ 4335450 (+) True G109662
TU137459 lncRNA downstream 893 5021296 ~ 5022178 (+) True G109780
TU137465 lncRNA downstream 24013 5044416 ~ 5044633 (+) True G109786
TU137473 lncRNA downstream 78593 5098996 ~ 5106948 (+) False AMCG00006460
TU137535 lncRNA downstream 332053 5352456 ~ 5353170 (+) True G109837
TU137646 lncRNA downstream 525804 5546207 ~ 5546436 (+) True G109933
AMCG00006455 mRNA upstream 1403 5015646 ~ 5016686 (+) True AMCG00006455
AMCG00006452 mRNA upstream 50056 4961206 ~ 4968033 (+) True AMCG00006452
AMCG00006454 mRNA upstream 87180 4926843 ~ 4930909 (+) True AMCG00006454
AMCG00006453 mRNA upstream 91309 4921018 ~ 4926780 (+) True AMCG00006453
AMCG00006451 mRNA upstream 311652 4699666 ~ 4706437 (+) True AMCG00006451
AMCG00006461 mRNA downstream 59347 5079750 ~ 5090677 (+) True AMCG00006461
AMCG00006460 mRNA downstream 73868 5094271 ~ 5107022 (+) True AMCG00006460
AMCG00006459 mRNA downstream 107456 5127859 ~ 5134715 (+) True AMCG00006459
AMCG00006458 mRNA downstream 119139 5139542 ~ 5149792 (+) True AMCG00006458
AMCG00006468 mRNA downstream 136195 5156598 ~ 5181731 (+) True AMCG00006468
TU137394 other upstream 490351 4524806 ~ 4527738 (+) True AMCG00006445
TU137384 other upstream 540519 4476934 ~ 4477570 (+) True G109714
TU137203 other upstream 856116 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 862340 4152816 ~ 4155749 (+) True G109570
TU137156 other upstream 1054093 3963597 ~ 3963996 (+) True G109538
TU137460 other downstream 4492 5024895 ~ 5025906 (+) True G109781
TU137474 other downstream 60478 5080881 ~ 5098698 (+) True G109795
TU137475 other downstream 60478 5080881 ~ 5098698 (+) False G109795
TU137492 other downstream 106954 5127357 ~ 5128829 (+) False AMCG00006459
TU137762 other downstream 958659 5979062 ~ 5982909 (+) True G110023

Expression Profile