RNA id: TU137461


Basic Information

Item Value
RNA id TU137461
length 639
lncRNA type intronic
GC content 0.32
exon number 1
gene id G109782
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5020037 ~ 5020675 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTATTCTTTTGGCTAGCTAAAAGGAAGATGCAAgcgccattaaaaacaaactctcTGAAACACGTCCTGCAAACTCAGACACCTACAGGAAGCACAGGacattcttctctctctctctctctctctctctctctctctctctaaaaataacaatacaggCATCAACAAACCGATACAGACAATTTGTACTTtacaaagattttaattttaattggaaactgttaacataagaaaaaaaaaactttggttAATAAATGAGAACTCTTTGTAATTAATAGCATTATTTGTAACAATAAATAGAATATGTAGTGCCATACGacttattgctttttattgttgttatttacatttactgtcTCATGTggaatacaaaacattattattatttttattttaaatattttttctactaATATCTTCCTTTGGTTTACCCATACACCAACACACAATCAAGATATGCTCAAAGTACCTCTGGGCGTTTAGGTTTGTTTTCAAAGCCGATTAAGTGCTTAATTAATGTAGTTTTGGAGAATCTTAAGTGGTATCATTGTCTAGTAAATGCCTGTTGTTATCCAAACCTTTGAAAGAAGTTTGGACATTAGACCACGGTGCAAAGTCATGCTTTtttatgcaaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137457 lncRNA downstream 48849 4970864 ~ 4971188 (-) True G109778
TU137436 lncRNA downstream 272803 4746970 ~ 4747234 (-) True G109761
TU137408 lncRNA downstream 498668 4515937 ~ 4521369 (-) True G109736
TU137407 lncRNA downstream 498668 4516055 ~ 4521369 (-) False G109736
TU137406 lncRNA downstream 504462 4514310 ~ 4515575 (-) True G109735
TU137499 lncRNA upstream 115843 5136518 ~ 5136744 (-) True G109815
TU137574 lncRNA upstream 325008 5345683 ~ 5347227 (-) True G109875
TU137582 lncRNA upstream 388665 5409340 ~ 5409571 (-) True G109878
TU137623 lncRNA upstream 414262 5434937 ~ 5435764 (-) True G109916
TU137664 lncRNA upstream 556795 5577470 ~ 5580727 (-) False AMCG00006476
AMCG00006447 mRNA downstream 527507 4484214 ~ 4492530 (-) True AMCG00006447
AMCG00006448 mRNA downstream 536157 4483234 ~ 4483880 (-) True AMCG00006448
AMCG00006441 mRNA downstream 543390 4454881 ~ 4476647 (-) True AMCG00006441
AMCG00006439 mRNA downstream 578603 4439800 ~ 4441434 (-) True AMCG00006439
AMCG00006440 mRNA downstream 589053 4421029 ~ 4430984 (-) True AMCG00006440
AMCG00006456 mRNA upstream 42786 5063461 ~ 5067740 (-) True AMCG00006456
AMCG00006463 mRNA upstream 90487 5111162 ~ 5114090 (-) True AMCG00006463
AMCG00006462 mRNA upstream 95041 5115716 ~ 5123628 (-) True AMCG00006462
AMCG00006470 mRNA upstream 329529 5350204 ~ 5390268 (-) True AMCG00006470
AMCG00006471 mRNA upstream 415868 5436543 ~ 5483801 (-) True AMCG00006471
TU137277 other downstream 854437 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 2690046 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 2889782 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 2995894 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3138200 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 993429 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1764638 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 2057714 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 3701713 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3767143 8787818 ~ 8794062 (-) True G110520

Expression Profile