RNA id: TU137474


Basic Information

Item Value
RNA id TU137474
length 1502
RNA type TUCP
GC content 0.56
exon number 9
gene id G109795
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5080881 ~ 5098698 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCCCTCCGCACACTGCAGCGGTGTTACCAAACCCACAGCAAACAGGAGCGGACCATTCTCTCAGCCCAGGAGGCGATTCCCCCGCCGCTGTGCGAAGCCGCTCCCGGGACACTGTTCATCCTTCTCAAGTGCGGAGGCTGTGCATTTTCCACAAACGTCCCTTTTTGCCAAACCACGGCTCTTTCTAAAGGCAGGACTACGAATTAAAAAATCCCCGTCTGCACCGTGAGGTTATCCCGCTTCTCCCCCCGCTTTCCTGGGAAGTGGTTGTGTCTTCCTGCTGCCATGTTGGAGTgagccgccgccgccgccgctcgCTGGAGTTGCCGTGAAAGTTTGCACTCGCCGCTCTCCCGGAGAAACCAGTGTCTGGGCCGACTGGGAGCGACTGGCGGGGCATTGGCGTCGTGTTTCCCCACCCATCCAGCCCGGAGGACCTGCGCCTCACCTCGGCATCTGGGGACAAGACAAGCCACCCCGCTGCAGCATCCATGAGCAGAGGCAGCGCCAGCGCCAGCGCAAGGCCACGCCGATCCATGCCTGCACACATCTGAGCGCACAGACTGGTTTTTATAGAGagatttagtgttttgtttttgcgtgtgtgttttggaggggtgggggtgggggggatacaATGAACAACCAACACCCGCAGCGGCGGATGGCGAACATCGGCTCCATACTCCTGACCCCGCAAGAAAACGACTGCCTCTTCAATTACCTCGGCAGGAAATGCATCACTCTGTCCTCGGCCGTGGTGCAGGTGTACGCGTCCGAGCGCAATGCCGTGTGGTCCAAGAAGTGCTGCGGTGTGGCCTGTCTGGTGAAGGACAATCCCCTGCGCTCGTACTTCATCAGGATATTCGATATCAAGGAAGGGAAGACGATGTGGGAGCAGGAACTCTACAACAACTTCAGTTACAGTTTTTCGAGACCGTACTTTCTCTCCTTCGTAGGGGACGCGTGTCAGGTTGGGCTTAACTTTGCGAGTGAAGAGGAAGCCAAGCGCTTCAGGTCAGCGGTTGGAGATCTGCTTGGACGGCGACAGAGAAGAACAGaaaaAAGACGCGACCCTCCAAATGGACCTGCATTGCCCATGGCCACAGTGGACATAAAGAATCCAGAAATCACGAACATGCGGTACTCGAACTCCCAACACGCTCCCAACAACATCCTGCACCCCAACCTCGTCAAGGACAAGAAGAAAGTCAAGGGGAAAAAGAAGAAGTTGACCAAGGCAGACATCGGGACCCCCAGCAACTTCCAgcACATTGGACACGTTGGCTGGGATCCAAACACAGGCTTTGATCTGAATAATTTAGACCCGGAGCTGAAGAACCTGTTTGATATGTGTGGGATCTCGGAGGCACAGctgaaagacaaagaaacatCCAAAGTGATCTACGACTTCATCGAGAAGAAGGGCGGGGTGGAGGCGGTAAAGAATGAGCTGCGCAGGCAAGccCCCCCACCGCCCCCGTCTCGAGGAGGccctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137465 lncRNA upstream 36248 5044416 ~ 5044633 (+) True G109786
TU137459 lncRNA upstream 58703 5021296 ~ 5022178 (+) True G109780
TU137458 lncRNA upstream 60478 5018089 ~ 5020403 (+) True G109779
TU137446 lncRNA upstream 156087 4923132 ~ 4924794 (+) True G109767
TU137391 lncRNA upstream 559632 4518917 ~ 4521249 (+) True G109721
TU137473 lncRNA downstream 298 5098996 ~ 5106948 (+) False AMCG00006460
TU137535 lncRNA downstream 253758 5352456 ~ 5353170 (+) True G109837
TU137646 lncRNA downstream 447509 5546207 ~ 5546436 (+) True G109933
TU137710 lncRNA downstream 700902 5799600 ~ 5804559 (+) True G109978
TU137770 lncRNA downstream 885092 5983790 ~ 5984250 (+) True G110024
AMCG00006455 mRNA upstream 64195 5015646 ~ 5016686 (+) True AMCG00006455
AMCG00006452 mRNA upstream 112848 4961206 ~ 4968033 (+) True AMCG00006452
AMCG00006454 mRNA upstream 149972 4926843 ~ 4930909 (+) True AMCG00006454
AMCG00006453 mRNA upstream 154101 4921018 ~ 4926780 (+) True AMCG00006453
AMCG00006451 mRNA upstream 374444 4699666 ~ 4706437 (+) True AMCG00006451
AMCG00006459 mRNA downstream 29161 5127859 ~ 5134715 (+) True AMCG00006459
AMCG00006458 mRNA downstream 40844 5139542 ~ 5149792 (+) True AMCG00006458
AMCG00006468 mRNA downstream 57900 5156598 ~ 5181731 (+) True AMCG00006468
AMCG00006464 mRNA downstream 111330 5210028 ~ 5231466 (+) True AMCG00006464
AMCG00006467 mRNA downstream 145080 5243778 ~ 5301376 (+) True AMCG00006467
TU137460 other upstream 54975 5024895 ~ 5025906 (+) True G109781
TU137394 other upstream 553143 4524806 ~ 4527738 (+) True AMCG00006445
TU137384 other upstream 603311 4476934 ~ 4477570 (+) True G109714
TU137203 other upstream 918908 4159523 ~ 4161973 (+) False AMCG00006413
TU137199 other upstream 925132 4152816 ~ 4155749 (+) True G109570
TU137492 other downstream 28659 5127357 ~ 5128829 (+) False AMCG00006459
TU137762 other downstream 880364 5979062 ~ 5982909 (+) True G110023
TU137766 other downstream 882498 5981196 ~ 5982909 (+) False G110023
TU137861 other downstream 1421167 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 1813178 6911876 ~ 6912254 (+) True G110163

Expression Profile