RNA id: TU137574


Basic Information

Item Value
RNA id TU137574
length 1519
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G109875
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5345683 ~ 5347227 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCAGTATAGGAACTGAAACGAACAGCATTGCAAGATGGGGCTtagtcaaatgttttttattgggCTGTACCCCATTAAATCGGCTGTATTTATGAGGGTATGATGTCATTTGTATCTTCAGACCAAAGGATCCTGCTTATATTTCTCTTGTAGGGAAAAGCACAAGTGTCCAACACACTGCCTGCCTAAACACTCAATAAACACAAGAGAGGCAGAGGTTTAATGACTTAACAATGTGAATTTAATGAGCGAATGAGCCAATACAAGTATCTGAAATGCATCTTAACAATGCAGtacacagcaattcaaaatcaTTCACTGAAACAATTCTGCGCctcatgaataaaacaacataactcttatgttatttttgtaacacgatttttgttttaaagctatAAAGTTTCACGCATAGATTTTAGAAATACAACATTTGACTGTGAGTTGCACTAATTAGTTTCTTATTTGGAAGATTCTGGTAAATTTTTTCAAGCCATGTATCGAAGAGCACCAAGATATCTGAACCCCGAAGCAAACCTTACAAACCCAGTTACTTTTACTTGTTGGAAGTATTTTGGGCCCAAAATTCCTTAGTGCAATGATCTGAGgttgatatatatttgttgtattcCAGCGGGAATAAAATCAGTGAAGAATTATAATTAAGgtaaaaacaacatgcaaactGTGTGCTTGAGGATGTAAAATTAGGTCAAAATACtttgaagtaaataaaatgtagatcaCTCTCTGTCCACcatagggctagaccaaatgaaaactcTGACCCACCAGCAAATCGCTGATTATGAAGTTGTAGTGTATCGTGTTTGgatttataaataatagaaagatgcttctaacaataaattaaactgcaatggGGTACAGATCTGTACTTTGCGATTCGTGGACAGGTCAAAGATTAGATCTAACCAGATTTCTCTGTTGAGGAGCAATTACATTTGATCACATTTTCCCTGTTCCTTGAATTATCCAAGGCATTTAAAAGGCTGTTTCGAATGCAATCCCAGTAAGAACTTCCCAATATTGAGACACCGGGGGGGGGcgaaatatattttcacagcatcatctaaacaaataaaaacaaaaacactgaatgcTCAGCCGGTCTCCCGGAAGACGCTTTCCGACTTCAAATGTAGTGTAAGTCTGTCAATAGCAGCACTCACTTGCGGGTTGTGAGCTAGTCTGAGAATGAGCTCTTTGCGTTGATCTGTATTCCCTCTGCCTGGATGCGCTTCAGCAGAGGTCCATAGATGTTCTTGGTTAGTGGGAGAACCAGTCCTTTTGTCTGAATTTCACCTGAAAGAAAATCCAAGGAGACGTATTAAATCTGGCGTCTGAAGCATAAACATGTAAACAGATTCAACactgcttcttcttttttgacTCCTTAAATAAAAATTTCCCAAAGGATTATGCATGATGTGAGGCTGCAGCGCCTGTTGTCAATTACTTTTCCACAATTTCACCGATATAAAATGGTTTCTGAC

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function
GO:0016298 lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137499 lncRNA downstream 208939 5136518 ~ 5136744 (-) True G109815
TU137461 lncRNA downstream 325008 5020037 ~ 5020675 (-) True G109782
TU137457 lncRNA downstream 374495 4970864 ~ 4971188 (-) True G109778
TU137436 lncRNA downstream 598449 4746970 ~ 4747234 (-) True G109761
TU137408 lncRNA downstream 824314 4515937 ~ 4521369 (-) True G109736
TU137582 lncRNA upstream 62113 5409340 ~ 5409571 (-) True G109878
TU137623 lncRNA upstream 87710 5434937 ~ 5435764 (-) True G109916
TU137664 lncRNA upstream 230243 5577470 ~ 5580727 (-) False AMCG00006476
TU137732 lncRNA upstream 455345 5802572 ~ 5803261 (-) True G109995
TU137733 lncRNA upstream 456271 5803498 ~ 5804452 (-) True G109996
AMCG00006462 mRNA downstream 222055 5115716 ~ 5123628 (-) True AMCG00006462
AMCG00006463 mRNA downstream 231593 5111162 ~ 5114090 (-) True AMCG00006463
AMCG00006456 mRNA downstream 277943 5063461 ~ 5067740 (-) True AMCG00006456
AMCG00006457 mRNA downstream 294492 5017795 ~ 5051191 (-) True AMCG00006457
AMCG00006447 mRNA downstream 853153 4484214 ~ 4492530 (-) True AMCG00006447
AMCG00006470 mRNA upstream 2977 5350204 ~ 5390268 (-) True AMCG00006470
AMCG00006471 mRNA upstream 89316 5436543 ~ 5483801 (-) True AMCG00006471
AMCG00006473 mRNA upstream 163362 5510589 ~ 5513330 (-) True AMCG00006473
AMCG00006474 mRNA upstream 171444 5518671 ~ 5534047 (-) True AMCG00006474
AMCG00006472 mRNA upstream 203590 5550817 ~ 5551857 (-) True AMCG00006472
TU137277 other downstream 1180083 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3015692 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3215428 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3321540 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3463846 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 666877 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1438086 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1731162 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 3375161 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3440591 8787818 ~ 8794062 (-) True G110520

Expression Profile