RNA id: TU137582


Basic Information

Item Value
RNA id TU137582
length 232
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G109878
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5409340 ~ 5409571 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCGGcactgtgtatgtgtctgtgtcacaGAGAGGGTTGTCTGAGGATAGGAAACGGCTACTGTATCTGGCTTTCCATGAGCAACGCGAGTGTGGCTCCTCCTGGCAGCGCTGCCACCATGTAGCCGccgctgcgctgcgctgcgctgcgctgcgctgcgtGTATCCAAGGCGGTGGGCGGTGCGCCTCCACAGTCACTCTCCCTCCGTTCACACCGGCGGTGCCCAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137574 lncRNA downstream 62113 5345683 ~ 5347227 (-) True G109875
TU137499 lncRNA downstream 272596 5136518 ~ 5136744 (-) True G109815
TU137461 lncRNA downstream 388665 5020037 ~ 5020675 (-) True G109782
TU137457 lncRNA downstream 438152 4970864 ~ 4971188 (-) True G109778
TU137436 lncRNA downstream 662106 4746970 ~ 4747234 (-) True G109761
TU137623 lncRNA upstream 25366 5434937 ~ 5435764 (-) True G109916
TU137664 lncRNA upstream 167899 5577470 ~ 5580727 (-) False AMCG00006476
TU137732 lncRNA upstream 393001 5802572 ~ 5803261 (-) True G109995
TU137733 lncRNA upstream 393927 5803498 ~ 5804452 (-) True G109996
TU137753 lncRNA upstream 444243 5853814 ~ 5855502 (-) True G110015
AMCG00006470 mRNA downstream 19072 5350204 ~ 5390268 (-) True AMCG00006470
AMCG00006462 mRNA downstream 285712 5115716 ~ 5123628 (-) True AMCG00006462
AMCG00006463 mRNA downstream 295250 5111162 ~ 5114090 (-) True AMCG00006463
AMCG00006456 mRNA downstream 341600 5063461 ~ 5067740 (-) True AMCG00006456
AMCG00006457 mRNA downstream 358149 5017795 ~ 5051191 (-) True AMCG00006457
AMCG00006471 mRNA upstream 26972 5436543 ~ 5483801 (-) True AMCG00006471
AMCG00006473 mRNA upstream 101018 5510589 ~ 5513330 (-) True AMCG00006473
AMCG00006474 mRNA upstream 109100 5518671 ~ 5534047 (-) True AMCG00006474
AMCG00006472 mRNA upstream 141246 5550817 ~ 5551857 (-) True AMCG00006472
AMCG00006476 mRNA upstream 170859 5580430 ~ 5603733 (-) True AMCG00006476
TU137277 other downstream 1243740 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3079349 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3279085 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3385197 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3527503 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 604533 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1375742 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1668818 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 3312817 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3378247 8787818 ~ 8794062 (-) True G110520

Expression Profile