RNA id: TU137623


Basic Information

Item Value
RNA id TU137623
length 828
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G109916
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5434937 ~ 5435764 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCACTCGGATctttgctgtggttttattattattctacatCAAACCCTGCTGAATCAGGaaacagtaaaaatacattgttgagATTGGTGTGGTTTATGGTGTGGAGAGATACAGACTGGAACTCTATTGAAAAgaggaaaatgtgaaatacgTCTGCAGAGGGCACCAAATTATGAAGACTGGTCAAAAGAGCATTGGCCAAATACATGTTGCGGACACATGAGACAGTGATTGAAACGGTTCAGCTCTCGGGGTACAAGGATGTTTGAGAAGAAAAATGGGTGAATGTTTCAAAATGGAGTAACACCCCCAACCAAGGTGGAGGTCATTTTTAGATTTGGGATAATGTATTCACAGCTGACATGTTTGTGGTTATCTGATGAAACCGTAGTAGGGTTTGTAGAGCACAGACAtaacgcacacaaaaaaacccGTTCAGTTAGAGGTTACAGATGTTCATAGAAATGTTGCAGGAGAGCTTGGCGCTTTGGCATCTTTTGAGTTGTTGGTCAGGAATTTCCCCCGGTCAAAATGACACTTTACTGTGAACCCTGAAGTTGGAAGAGACTGTTAAAAGTGAATTCTCGCCTACTGTGCATCCAAGAAAAAAGATCACACTGAAGAAACTACTTCAGCATATTCACAAACACTCAAGGCACTTCCTTTGCCACTTCTTCTtgtataaatacaattcatCTCCATATTCTTTTGGATGCACAATACATGAGCAATACTGTGTCTTTCAACAGCTGTGTTGGGATTATATTTTAGAAAGTCAGAAAAACAGTAATACTGCTAAAATAACTActtaatataattgaaaac

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137582 lncRNA downstream 25366 5409340 ~ 5409571 (-) True G109878
TU137574 lncRNA downstream 87710 5345683 ~ 5347227 (-) True G109875
TU137499 lncRNA downstream 298193 5136518 ~ 5136744 (-) True G109815
TU137461 lncRNA downstream 414262 5020037 ~ 5020675 (-) True G109782
TU137457 lncRNA downstream 463749 4970864 ~ 4971188 (-) True G109778
TU137664 lncRNA upstream 141706 5577470 ~ 5580727 (-) False AMCG00006476
TU137732 lncRNA upstream 366808 5802572 ~ 5803261 (-) True G109995
TU137733 lncRNA upstream 367734 5803498 ~ 5804452 (-) True G109996
TU137753 lncRNA upstream 418050 5853814 ~ 5855502 (-) True G110015
TU137917 lncRNA upstream 1384474 6820238 ~ 6820568 (-) True G110152
AMCG00006470 mRNA downstream 44669 5350204 ~ 5390268 (-) True AMCG00006470
AMCG00006462 mRNA downstream 311309 5115716 ~ 5123628 (-) True AMCG00006462
AMCG00006463 mRNA downstream 320847 5111162 ~ 5114090 (-) True AMCG00006463
AMCG00006456 mRNA downstream 367197 5063461 ~ 5067740 (-) True AMCG00006456
AMCG00006457 mRNA downstream 383746 5017795 ~ 5051191 (-) True AMCG00006457
AMCG00006471 mRNA upstream 779 5436543 ~ 5483801 (-) True AMCG00006471
AMCG00006473 mRNA upstream 74825 5510589 ~ 5513330 (-) True AMCG00006473
AMCG00006474 mRNA upstream 82907 5518671 ~ 5534047 (-) True AMCG00006474
AMCG00006472 mRNA upstream 115053 5550817 ~ 5551857 (-) True AMCG00006472
AMCG00006476 mRNA upstream 144666 5580430 ~ 5603733 (-) True AMCG00006476
TU137277 other downstream 1269337 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3104946 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3304682 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3410794 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3553100 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 578340 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 1349549 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1642625 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 3286624 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 3352054 8787818 ~ 8794062 (-) True G110520

Expression Profile