RNA id: TU137710


Basic Information

Item Value
RNA id TU137710
length 4960
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G109978
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5799600 ~ 5804559 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGCTAGTGTATACAAATTTTCAGGAAGAGGTATGAAGGGGCTTATTCAGTTTCCTCTGAGCCAGCCGAAACCAGAGCCCCGAGGCTGAAATCTAACTCGGTCCGACCGCTCTCTGTTCTCCAGTCAGCCTCCAGTGGATGATATTATCCTGAAGTAGATAAGTTTCTCATCTTgcaaaaagaaatcaaaagtaGAAGCAATTTCTCACATTGTAAAGTATAAAGCTTGGGTACATACAAGAGCTTTCCTCTTTCCCTGAagtgcagcagtgtggagtcgCGCTCAGGGCTCTGGATTCTGaagcagaggattgtgggtaGAGTCCCAGgtgagggacactgctgttgtacccttgagtgaAACAGGGTGATCGAGCAagatacccagctgtataaaataatgtgatgtagtGTAACGATtgtaagttgtcctggataagtgcgtctgataagaaatataataataatatgcgtGCCTGATTCCATTGCCATCGTGAACATTGAGAAGTCTCTCgaataacaacacaataagAATATTTCTATTTTCACAAAAGGAATAATTACGACCATGTGTAAAGGAAATTGTGACCGAAATGTACacaattcaaataatgtataaagTATGTGAAGAAGGgtcaacatattttattaatcaggCAGCGGCTTTACGTGTTGTCTCTTGTCGAGACACACCTGCGGGGCCGTCTGTCTACTTTTGAATCTGGGGAACATATGGTTATAGCCATTCAGGTACAGAGTTAAAACAAGGCAGCTGGGGAGCAGTCGGATTTTTTTAAGCGTTTTTAAAACATTCGTCTGTTATGACTTTTAAAGAGGTCTTGTGAGAAGCACGGTGGAAAATCATTGAATGACTGAAAGACAAAATCCCACCTGATATTGGTGGGAATAGAAAAGTATTAAGCCGGGTTTTTAGCAAGTTCGACCAGGGAGACGTTGGTAACGTTGGAAGGGAATCGTAAAGCTTGTTTTCTTTAAGtacaaaaaagcacaacaacagCAGATAATCATTATCGACACAATTTGGAAAGTATTATGTTTTCATAGATGGATTActtgtttaatttctgtaaacGTTAATGTTACatcctgcttttatttattaaaactgcagttacacattttaataaactcaTACCGAATAAAGTAAGCAATGGCATTTTGTTAAATGAGTACAGAGCCTAATTGATAACACAGTTAACAAATATATAGCTTGAGATGAATTTACAGACTGTAGGCCGTTCCATTTGTGACCGGTTATTAGTTTACTAATTCACgggaatattgttttcatttgtgccCATACTTACTCAGTCTGTGTCCACAATTAGCTTAGTACAAACCATACCGATGAATAATCTGTACATGGTTTTTCCAAGTCGTGGTCGTAAATGTAAAAAGTGTGGAAGTTAGTAAACCCTCACCGCAAATTCATCtcgatgtttacatttttttaacgcTATTATCTGTGATAGTTATCTCAATTGTGTCCAGAAAAAAACTATCCTAGAGGGACCACAATTTTCCTCAGGATCCTAATGTTTCTAGAGAATGAATCTCCaaccatttatatataaatgtgtgtgaagAATTGAGGAATGTTTCTGCTCAACTGCAGATTCAATACGAATACACAATCCTCACATCTGCCGGGCTGCtatatttcagtaaatatagGCCACTGGCATCCTAGGAACTCACTGAAATGATGTTTCTGGAGTTCAGCTGTCTGGGGGGCCTCTGCAGCAAACAAAGAGGAAAAAGCTGGCGCTCCTTCAAAACACAATGTAGTCTAGCTTGGCAAGAAGAAAAaccttttagaaaaaaatgttatatcagCAACACATCAGCATAGATATTTCAGCAATCAAGtctttgtcagtgtgtgcgATCTAGGTCTTCAGCTGTGCCTTGAATGTACAAGAAGGAAGCAAAATGATTATGGCACGGTTATTTCACAAACCATAGAATAGCGTTGATAGCAGATATTAAATCACTCCCTCTTCTCAGCCGTCAGTCTGTACTCTTTAAATGCAAGACAACCTCTTCCACGTATATAGAAAAAGGAAATCAAGGTGTCAAGTCCTCCGTCTTAGAAATCTACCTATTCAATGCCCAGCTGAAGAGCGTAATAAAGTATAATTAGAGTATAAACGTTTGACATGATCAGTTTTGGCTATTTTAGTTTCCCTGCAGACAAACTGGGAACGAATTCACAGTGCTGATGTCATTGTGAGATACGATGTCTTCGAGACAGGGCCCGGACTCCTGCCATACAATCAACCTTCTCACACAAAATAATCTCAGGTGACTGAACAGTGATTGTGAACATTGGTATAGAGAATAAAACCCTTTGTTTTGAGCCGAACGCATCCTTGTGTTTAGTAAACATCCATCGAAGCCTTTGAAACCTCTGTAGAAGTTTTTATTACATGTTGGTGAAACGCTGCCTGTCTCGGACTCTTATACtgtgaattttacattttggcaaTGTGTTCTGTAAGTTGTCTAATTTACAAGTGGAGTATCTATatctgggggggagggggaaacatacaccaaaaaaaaaacaggtgtttcagtttttttttttttttttttttaattctaaacttgatgtttttaatattcatttgaAAAGCAGTATTTTAATCTGTTCGATTTCAATTGTTCTTTgcagtaaatatgtttttaatggaagCGAACCTGCTTTACGATAGCTGCTTTTACTGCTCGTaggtattattgttttttttttttctgcctcgCTTCCTCCcatcctcctttctctctcctcaaATCCGACTGCCGTTTCAGCAGACCTGCCTGCGAAATCCAAAGCAGTCTATGAATCTCCTCAATCAATCGTGCGCAGCGAGGATATCGAGTACTTGTGAGTGGGATGAGTCTTCTTGCAGttcctccacctctctctccttgttGGACTGATACAGTGTGCGCTTCCCCTACAATGACTGACTGTGGGTGGATGAAAGGATACGTCCCGCACTGCAATATATATCCCACTGTCCTCAATTTCAGGGTAACAGCTATATAGCTTTGACCGCACTTTCTGAATTTCAACCCATATGAAGCGTACCTTTCCTGTCTCTGCCCAGGGGATAGAATAATCAATGCATGTGCATTACAGTTGCAGTCTGTGGTTAAATAATCTTTGTAAACTCTCTGATTTTGTAAATTGTCCTAATTCTCTCGTTCAGGCTGATTCGCAGCAGAATGGCACCGAAACCCAATATAtgaatgtcaaataaaaatgaatggtttGCGAATTCAAGAGATTCAGAAATGCTATTGCATGACCTGGGCGACTGTTCGGCCCCAGTAcgtttttatattaatttgcgTACCTTTCGTTCCAGTTATTGTCACTGCCGCCGGGTGCATATTTTCCAAGAGTGCATAAGGCAGCTCACGATGAAAGTGTCAATAACTACAATGTTTCTCTCTGTGAACGAAGCcctttgttttggaaatgcctATTTTAGAGCCTTACATAGACTTAATCCATTGTTTATATCACAAAGGGCAAGTTTTAATTTGtagatgattaaaaaaaatagactttTCTGACCCAATTTGAACAACTGCTTAAGtgttacattgttttcatttgttattttgaaaggaaataaaaatgctttatatatacCTTTATTTGTTCGATTCTTTTTGTTTCAATGTGCTTATCGATTTTAATGGTTTAGACTATTGAGAAATTGTTATTTATAGTGAGacaaatattaattcaattgaCAAATACTCCCTTTGTTGTTAAAACGTGCAATTCATTGAAGTACTGTTAACACAGTTAGGTTTGTTTTGTGACAATATAAGTTGATTTTCTGCTTAAATTTAGAATTTGATATTCAAGTTTTgtggtgatgtttttttgttcagttttttttttttactcgtCATTACATGTCATTAAATGATGTAACACCTTGCAGTTCTGAGATAGACCTCCAGTCATTGTTTTTGCcacaaagcattattattaggGGACAAGAAGAACAAAAGGCTTCTGAGTGGCTTGTTCTCACCTTTTTGTGCACCACTTCCTTCGATCTAAATCTTTGACGTTATAAAAACAGATTGAACAAAGCCCATCTGAGTTCCACTGGGCTTTCACACAGTCCTGACGTTCGTACCAGAGTGTGAACTAGGATGGCACAATAGGTTGCGAAGTACAAGCAGGCAGTGGTCAATCTAAGCTCCTCGTCCGAACTGTGGACGTCTCTTGTGTGCTGTCCTGTGTCGCATAAGACCAGCAGATCCACTTCTGAGATATCAGACACTGGCTAGGGTTTGCGATGTCTAGGGGACAGTTCTGCCGTGCCTTCACACTGCAAGGGTTTTATTCCACATGTGCGTGTAGACCTCTCCTAACAAATGTGCTTTGGGTGGAAAATAACAATGTAGATACTTAAAGACTGACTCCCTTTACAAACAAAGGTGTATTTTGCCCAGAAGGGGAGCACGAGGCTTTCTGAATGAATACGTCAGATGTTACGTCTGAGACTTGGCTTATGAGATGCTGTTTGTGCAAGTTAAAATCCCCACCccgtctctctccttcttccccAGAATATGTACCTGTCAACCACTGTATTATAACGGCAAATCATAGCTAATGAGCATGTCTTCCTCtgagttcattttaaattaatatattctgaAAGCCTTCAAATTGTATAGTATGGAGGTGGCAATAACAATAACTGTCTTTTAAATTTTGTGCCATAATGGGAATGTTCTTAAAAGTTTTTCAGTCATTCGGATGACTAATTTGTACTCTTGAAGAAATAAACCATGTGCACTTCAAGGCTTTCTCTGAGCTTTCTTCATTATGCATGAGAAAAGTAATACCAATACGCTGAGGAAATTATCCATtgggtatttttatttatgtttaatgata

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137646 lncRNA upstream 253164 5546207 ~ 5546436 (+) True G109933
TU137535 lncRNA upstream 446430 5352456 ~ 5353170 (+) True G109837
TU137473 lncRNA upstream 692652 5098996 ~ 5106948 (+) False AMCG00006460
TU137465 lncRNA upstream 754967 5044416 ~ 5044633 (+) True G109786
TU137459 lncRNA upstream 777422 5021296 ~ 5022178 (+) True G109780
TU137770 lncRNA downstream 179231 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA downstream 179397 5983956 ~ 5984250 (+) False G110024
TU137834 lncRNA downstream 413972 6218531 ~ 6220086 (+) True G110081
TU137910 lncRNA downstream 991190 6795749 ~ 6795994 (+) True G110147
TU137927 lncRNA downstream 1051321 6855880 ~ 6857998 (+) True G110161
AMCG00006484 mRNA upstream 1293 5783737 ~ 5798307 (+) True AMCG00006484
AMCG00006479 mRNA upstream 29954 5763354 ~ 5769646 (+) True AMCG00006479
AMCG00006480 mRNA upstream 75557 5699617 ~ 5724043 (+) True AMCG00006480
AMCG00006478 mRNA upstream 202893 5593752 ~ 5596707 (+) True AMCG00006478
AMCG00006475 mRNA upstream 308431 5490882 ~ 5491169 (+) True AMCG00006475
AMCG00006485 mRNA downstream 4385 5808944 ~ 5854451 (+) True AMCG00006485
AMCG00006483 mRNA downstream 114371 5918930 ~ 5958050 (+) True AMCG00006483
AMCG00006487 mRNA downstream 179914 5984473 ~ 5985996 (+) True AMCG00006487
AMCG00006488 mRNA downstream 184930 5989489 ~ 5996070 (+) True AMCG00006488
AMCG00006489 mRNA downstream 196562 6001121 ~ 6009470 (+) True AMCG00006489
TU137492 other upstream 670771 5127357 ~ 5128829 (+) False AMCG00006459
TU137474 other upstream 700902 5080881 ~ 5098698 (+) True G109795
TU137475 other upstream 700902 5080881 ~ 5098698 (+) False G109795
TU137460 other upstream 773694 5024895 ~ 5025906 (+) True G109781
TU137394 other upstream 1271862 4524806 ~ 4527738 (+) True AMCG00006445
TU137762 other downstream 174503 5979062 ~ 5982909 (+) True G110023
TU137766 other downstream 176637 5981196 ~ 5982909 (+) False G110023
TU137861 other downstream 715306 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 1107317 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 1849113 7653672 ~ 7655194 (+) True G110279

Expression Profile