RNA id: TU137753


Basic Information

Item Value
RNA id TU137753
length 1639
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G110015
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5853814 ~ 5855502 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTATTTAAATCCGCATCTGGCATTAAAAGTTAGGTGTCTTCGGCAACAAAAATTCTGGATGAGAAACCATACTCCTATATACATAAAGCTTTCGACATATTAAAACTCAAAACCCAGACCAGAAAGGTAACGTTGGACCGAGATCAGCATCTGCGTCTACAGTACGAGTCATACAGGCACAGTGTTACGTTTCTTTCCTGTACACCGGTACAGCCGACACCCGAACCAGGGCAACGTTTCGTGAGATGAAGCACTACGGTTAGATGCATTCAGAAGACTTAGCAGCATGTTTAAGAGTTCAGAGACACTAGGTTAACAGCCTCATGtggaaaagcacacacacactcacacagaagaCATTTTGTCGGttaaattacaaagaaaatccTTGAACGGACAGAGACGACAAATATCTGACGTTATACCTGTACTGGGCCAAAATACTGCtattattaagaacataaaagcCAACTATGTTTTATCTACGGGTACGGCAAGCAGAGAGCGTCTGGAGAACGTTGACAGTTTCACACACTTTGGTCACCAGTCCTTTGTAATTGCGAACAGGACAGCACACCGTAGAGAGACGTTAGTTAAGAGCGTTGTGGtttaatcattatattttgCGACTATAAGATAATGTGGCTTGAGTTGCTTCCACTGCTTCTAATCTAACGAGTGGGATTACGTGGACTGCCACGGCGGTTTTATCCAGGAAGACCAGCTTAAGGATAAGAGACGCACAGTCACTCAAACTCGCTCAGAGCGCCATGCGGTGAGTTGCGGTCGTTACATAGATGACCGGACCTCCTCAGATCGAAGCTGCTACTTTGCGTTGCTGTACACACGACCACTGAGAGCACAGAGACACCCTGTCCGACGGGGCTGGGAAGCTGCTGCAAAGAATTAAAGGTGTTAGAGCCGAGTTGTGCAGCTTGGCAGCCGGTTCGGTCGCCTTCGATCCAGTCTTCGGCCGTATCACCACAAAGTGCGCAGTGCTGCTCGCCTTCGAGGTGCCACGCTGCCAACGTCATCCGTCGCATCCGGAGTATCGGCCACCTGTCCGTCCAGCATTCCCCGGGCTCGCCATATCTTTACAGTTCGATCGctattgaaaaatgaaatgttaaaagaggatgaattaattaaataacatttggGAAAGGTGCTGACAGAAGGTCCACAAACAAGGTGTGATTTCATTTCAAACATATAAGTGACTGGGAGCTGATAAGTAAGCACACATAGGCTGGCAGCGATCATGGAAAAATTACTTAAATCAGCCATCACAGATCTACTGAGAGACTGTAGTTTCCTTCAGGCCAGTGTTGGTGTCAGCACCtcatatacagacgggtgacaaattaaaggaaaaaccaacaaagtgtctctgtaaggtgttgggcaccacgagccgccagaacagcttcaatgctcttggcacagattgtatgagtctctggactctactggagggatgaacaccattcttccaaaagatattccctcatttggggttttgatgatggtggtggagagcgctgtctaacacgtcggtccaaaatctcccatagatgttcaattgggttgaggtctggtgactgtgaaggctatagcatatgattcacatcattgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137733 lncRNA downstream 49362 5803498 ~ 5804452 (-) True G109996
TU137732 lncRNA downstream 50553 5802572 ~ 5803261 (-) True G109995
TU137664 lncRNA downstream 273087 5577470 ~ 5580727 (-) False AMCG00006476
TU137623 lncRNA downstream 418050 5434937 ~ 5435764 (-) True G109916
TU137582 lncRNA downstream 444243 5409340 ~ 5409571 (-) True G109878
TU137917 lncRNA upstream 964736 6820238 ~ 6820568 (-) True G110152
TU137931 lncRNA upstream 1056374 6911876 ~ 6912252 (-) True G110165
TU137934 lncRNA upstream 1081911 6937413 ~ 6937803 (-) True G110168
TU137935 lncRNA upstream 1088685 6944187 ~ 6944474 (-) True G110169
TU137984 lncRNA upstream 1251079 7106581 ~ 7107138 (-) False G110195
AMCG00006481 mRNA downstream 70669 5772245 ~ 5783145 (-) True AMCG00006481
AMCG00006482 mRNA downstream 156158 5664975 ~ 5697656 (-) True AMCG00006482
AMCG00006477 mRNA downstream 196693 5653275 ~ 5657121 (-) True AMCG00006477
AMCG00006476 mRNA downstream 250081 5580430 ~ 5603733 (-) True AMCG00006476
AMCG00006472 mRNA downstream 301957 5550817 ~ 5551857 (-) True AMCG00006472
AMCG00006486 mRNA upstream 123625 5979127 ~ 5984291 (-) True AMCG00006486
AMCG00006492 mRNA upstream 131148 5986650 ~ 5991143 (-) True AMCG00006492
AMCG00006490 mRNA upstream 139312 5994814 ~ 6001150 (-) True AMCG00006490
AMCG00006491 mRNA upstream 161132 6016634 ~ 6042924 (-) True AMCG00006491
AMCG00006493 mRNA upstream 195825 6051327 ~ 6067994 (-) True AMCG00006493
TU137277 other downstream 1688214 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 3523823 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 3723559 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 3829671 2020001 ~ 2024143 (-) True AMCG00006313
TU136165 other downstream 3971977 1881282 ~ 1881837 (-) True G108829
TU137807 other upstream 158602 6014104 ~ 6016943 (-) False AMCG00006491
TU137903 other upstream 929811 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 1222887 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 2866886 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 2932316 8787818 ~ 8794062 (-) True G110520

Expression Profile