RNA id: TU137762


Basic Information

Item Value
RNA id TU137762
length 3848
RNA type TUCP
GC content 0.43
exon number 1
gene id G110023
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5979062 ~ 5982909 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTGATTTCTACACACAGTGAGCTGCACCGTATAGGTAAAGAGACATGATCATCTtttcacactttattttcaatcatttttaatCTCAGCTCTTCACTGATAGAGACACAAGTGTTAAGAAGACCTTGTTCAGAGAAATGCATCGCAGTGCAGCAATAGAAAACTCGAGAGCTTGAAAACTTAATAAACTCTTTCATTTGTACTCCGCAATCGTAACTCAACAAGAGCTGTAATCTTGTCAGCTGAGGttacattgttatatatattgcTGCACAACTACAACACAATACAACGGTGGGCACTTTGAGCAATTACTGTTCTCTGCTCAGAGGACCTGCAATAAATATTTCATCACAGGTGTGTGAATCATTTTTCGAGTCgaaaaacaaatcagtacaGGACACATTTCCACTCTGTATCTGGGATATTGAGGGTTCATGAAAGCAGTGTCAAACAGTTCTCACTGTAGGAAAAGAAATGCCgaaaataacttttcatttgtataattgatgcagtgattttcattttctttcattaaactCCCTTCCTTTaatgagattttctttattagCCTATTTACATAATTGTGCTCTACACTGCTCTGGAGTGCCGGTAGTCTAATGTTTGAACTACACAGAAATAATAAGTAGACAACAAGACAGAAGTGACAGGGAATTAGCGAGAACATGACACACCTGTGCAAAATCCTAAAAGCCTGGTTTAAAGCCAGGTTACTGAGGTAGTGAGGGGTTTATTGTCTGTTCACAAAAACCCAATAGTGAACACATTTTATAGCTTTTTCCTCACTGAAAGTATTTTAATAGGGAATTTTCTATTCCTTTATTTGATCAATAATTGTCTGTCAATGAGGCCACACAGTGGGGAAACAccacagtacaaaaaaaaagtgctcaattacttaattacccTACACCTGAGCTGGACAGTTGGATAACGATTCTGAAACTGAGCAGGGTTTATTGATACAGTAGTTCATTCATCTCAAAGCTGAATATCTCTGACTCGGGTTGGAGGTGGTAAGACACAGGGGAGATTCACTCTATATCTAAGCCTCTCTAATTCACCAATCACAGGACATCTGGAACACAGGGATAGTTAGACTAATTAAGACCCACgattggctcaattaagcagtAAATGCTCTGGATGAAACAGAAACCTGGCATCCCCGGGGCTCTGCAGGACGCGGGTCGGCCACACCTGATCGAACAGCATGAAACTcttcactgtgtctctgtgcccgTCGACATATTCCTTTGACTATTTAAACggatggggttgggggggggcaaCACATCAGAGCAGCTGTCAAACTGCGATCAGCGCCTCTCTGCAGATCCCAACATCCTCCTTCCCCCGGTGTCATTACCGCTCTGTTTGCAGGTCCAGGGGCACGGAGAGGTGTTTGCCTCAGAGGGGGTGAGGAAGGAGAGCAGCACCGTCTCCCAAGAGGTGAGACCCCGTTCGAGAGGGAGACCGATCAACGGCTGGCTGACTGACAGGGCTGCCTGTTAGCAGAGCTGTCAGAGGAGGCTCTAACGGGGGGGTGCTTCCAGTCCTCGAGTGCTGCAGGGGTGGCCGATTTTCTGTTCCACCTCAGGACCTAATTACTTGCTTGATGTCATTATTAGGATAAGAAGCCAAATTGACTGTTCTTTCCAGGTCTTAATTAGTTGCTCGTTGAAAGGTAGAAGCTGCAGTTGAGCAGTTTGATTGATAGATTATTGATTCAATGGTATGCACTGACCTAATTAATGTGCAAAATCCTTCAGATCCAGtcattaaaagacaaataaatcatgtgttcagttaagtgaataatgagctcaattaactaattaagagaATTGGAAACCAGAGGCACTCGCTAaacaggactggactggaaGAAAGGTGCATTACATACATAAAGGACTAAAGGTAagattgtaataataaatatccaGATTTAGatttactttgaaaacaaaacttctCATATTTTCAACGAACTTAATTGAATTTACAGGGCTATAGTGACACCAAGTGGCAGAATGGAATCACAACTTCTGTAGCACAATTGCATCCCAGTAATAATTAACTGCAGAAATAATATCAAATAAGATAAGGGCTTTAATTCTGCTAATTTAGGTGATCTAGCTCTCCAGGAAactatacagttttttttaaataacgcCTGGcagaaaaccataaaataatgtCACCCGAGTCATTTCAATTACTTAAATAGAAAAAGGCTCTCACACTTcaatttaatgttaataaattataaaaatcaaGAGTCTGCTTTGAGTCAACTACAGTAAAAATGTCTTATTTCCCAGCTGCAATAAAATTAGCatacatcaaatatatttttggtaacAAAAAACTGATTTACCGTTTCTATCTTTACAAGAGCAAgatttaaatatcaaatgttCTCCATATGTTAACTGTGCAaatcaataacaaatatttacaccaCCTGTAAAAGGTTTTCTGGACTTATTGAACCTTCCAAGACACAGATATCAcagaaaatgcaacattttgaaagggcAGAAAATTGACAAGGTCTCAAGTTATTGACAATCTGTGATTCTAACCAAACGATCCAATTCTCACATTAATTAAGCTACTTTAAACTTAACTATTTcacttttaagaaaaatatatatgccaCCTCTTATCTTATACAGCTTGGGCTGTAACAAACTTTGCATGAGAGTCTCCttgatatacatgtatacaaaaataagagcgtccatttatttaatcatgttcACCACATGAATCTCTGCACGTCACTGCTGTCAGGCCAGTGGAAAGTCTTATTTAAAAAGAGGTAAATAGTCACCGCGTTCACAGCCGTGTACAAACCCAACTCCAGGAGAAGCCGGCCGGCAGAAGGTACGGGAATATTGAGTCTGTAAATCAAATAGGGCAGGATGAAATATCGAAACTCCAGCAGCTTCTGAGGGACGGTGGCGGCCGCGAGACACACGCAGAACATCAGGTTCCAGAACACCGATTTAGACTTCAGCGTGTCTGTGAAACTCCACGCTGTGAACACGTAGCCCGGCACCAACAAATAGGGCACCAGTCTGTGTTTCTGGAAGATCTTCTTCCACACGTAGAAAGGATAGTGTCTGTTGTCTGCCAGCAGATACTTGTGCACGAAGGAAAACCTCCAAACCAGGAAGAGGGCCAGAGCAGTCAGACACAGGCAGAACACAGGGTTCTTTCTCAGCCAACGCAGGAAGTTCACCGTCTTCTGGtaggaaaatgaatggaaaatggAGAACACCAACGTGAAGGAGAGAAAGTAAAACAGCTGTGGGAAGTTCAAACAGCCTTCGTGGCTGCTCCGGTCTCCCACCACTATCCCGCCGTTCAGCAGCACGAACACAACAAAGCCGAGCACCACCGTGATGTAAGGCCACATGGAAGATACAACCGCCTTGACATGCTGGGGGCTCAATAAGTATTCCACCAGGAATCGCGCCAGCTTGGTCATCCCGGCCACGGAGCCCAGATGAGGCGCGGAAGACCCGTCATCCTTCTTCTTCGTCTGCTCGGCTCTCCAGCTCTCGTCCATCTTCTGGGCGATGACCGTGCCGGCGCAGAAGGCCACCCAGATGACGTTGGTCTGGCGGAACATGACGGCGCAGACGCCCAGCAGCGCGGAGGCTTTGTGGCTGCCGTAGAGACACATCAGGTAGGCGAAGAGAGTGAAGAAGGTGGAGCCGGCGTCCGTGTAGTAGAGGAATGTGAAGAAGTACAGCACCGGGAAGGAGGAGAGAGCCAGGGCCGAGAGCACTCTACGAGAGGCAGAGCTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137710 lncRNA upstream 174503 5799600 ~ 5804559 (+) True G109978
TU137646 lncRNA upstream 432626 5546207 ~ 5546436 (+) True G109933
TU137535 lncRNA upstream 625892 5352456 ~ 5353170 (+) True G109837
TU137473 lncRNA upstream 872114 5098996 ~ 5106948 (+) False AMCG00006460
TU137465 lncRNA upstream 934429 5044416 ~ 5044633 (+) True G109786
TU137770 lncRNA downstream 881 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA downstream 1047 5983956 ~ 5984250 (+) False G110024
TU137834 lncRNA downstream 235622 6218531 ~ 6220086 (+) True G110081
TU137910 lncRNA downstream 812840 6795749 ~ 6795994 (+) True G110147
TU137927 lncRNA downstream 872971 6855880 ~ 6857998 (+) True G110161
AMCG00006483 mRNA upstream 21012 5918930 ~ 5958050 (+) True AMCG00006483
AMCG00006485 mRNA upstream 124611 5808944 ~ 5854451 (+) True AMCG00006485
AMCG00006484 mRNA upstream 180755 5783737 ~ 5798307 (+) True AMCG00006484
AMCG00006479 mRNA upstream 209416 5763354 ~ 5769646 (+) True AMCG00006479
AMCG00006480 mRNA upstream 255019 5699617 ~ 5724043 (+) True AMCG00006480
AMCG00006487 mRNA downstream 1564 5984473 ~ 5985996 (+) True AMCG00006487
AMCG00006488 mRNA downstream 6580 5989489 ~ 5996070 (+) True AMCG00006488
AMCG00006489 mRNA downstream 18212 6001121 ~ 6009470 (+) True AMCG00006489
AMCG00006495 mRNA downstream 125686 6108595 ~ 6128500 (+) True AMCG00006495
AMCG00006494 mRNA downstream 152598 6135507 ~ 6150798 (+) True AMCG00006494
TU137492 other upstream 850233 5127357 ~ 5128829 (+) False AMCG00006459
TU137474 other upstream 880364 5080881 ~ 5098698 (+) True G109795
TU137475 other upstream 880364 5080881 ~ 5098698 (+) False G109795
TU137460 other upstream 953156 5024895 ~ 5025906 (+) True G109781
TU137394 other upstream 1451324 4524806 ~ 4527738 (+) True AMCG00006445
TU137861 other downstream 536956 6519865 ~ 6588399 (+) True AMCG00006501
TU137929 other downstream 928967 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 1670763 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 2192851 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 2739541 8722450 ~ 8724066 (+) True AMCG00006552

Expression Profile