RNA id: TU137910


Basic Information

Item Value
RNA id TU137910
length 246
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G110147
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6795749 ~ 6795994 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTTTCTGCTGTTGCCAAGTTTTCTGATGACTGTTTTCCAGGTAAACATGCCATAAAGCTGTGAGATAAGAAGTGCAAATGGTTTTAGCACTTAATCTGGTGTCAATCActacaaaacatgaaatgccCCACAGTTTGCTTTCATCAAGGGTAACAGAGATGTATATTGATTGGATAACCCCCGTTCACTAGTGTATCTGAAACAGGATTGACCATACAATAAGTGTGTAGACAGACACTTCACT

Function

GO:

id name namespace
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko05012 Parkinson disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137834 lncRNA upstream 575663 6218531 ~ 6220086 (+) True G110081
TU137770 lncRNA upstream 811499 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA upstream 811499 5983956 ~ 5984250 (+) False G110024
TU137710 lncRNA upstream 991190 5799600 ~ 5804559 (+) True G109978
TU137646 lncRNA upstream 1249313 5546207 ~ 5546436 (+) True G109933
TU137927 lncRNA downstream 59886 6855880 ~ 6857998 (+) True G110161
TU137933 lncRNA downstream 141250 6937244 ~ 6937664 (+) True G110167
TU137991 lncRNA downstream 347273 7143267 ~ 7143659 (+) True G110201
TU138035 lncRNA downstream 444092 7240086 ~ 7240557 (+) True G110240
TU138043 lncRNA downstream 531036 7327030 ~ 7333170 (+) True G110245
AMCG00006505 mRNA upstream 2581 6786854 ~ 6793168 (+) True AMCG00006505
AMCG00006504 mRNA upstream 12385 6777971 ~ 6783364 (+) True AMCG00006504
AMCG00006501 mRNA upstream 248846 6541397 ~ 6546903 (+) False AMCG00006501
AMCG00006500 mRNA upstream 460906 6287734 ~ 6334843 (+) True AMCG00006500
AMCG00006499 mRNA upstream 528613 6254988 ~ 6267136 (+) True AMCG00006499
AMCG00006510 mRNA downstream 220825 7016819 ~ 7029460 (+) True AMCG00006510
AMCG00006511 mRNA downstream 261644 7057638 ~ 7058515 (+) True AMCG00006511
AMCG00006508 mRNA downstream 313350 7109344 ~ 7116757 (+) True AMCG00006508
AMCG00006509 mRNA downstream 353311 7149305 ~ 7183103 (+) True AMCG00006509
AMCG00006515 mRNA downstream 430139 7226133 ~ 7235139 (+) True AMCG00006515
TU137861 other upstream 207350 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 812840 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 812840 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 1666920 5127357 ~ 5128829 (+) False AMCG00006459
TU137474 other upstream 1697051 5080881 ~ 5098698 (+) True G109795
TU137929 other downstream 115882 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 857678 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 1379766 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1926456 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 2770219 9566213 ~ 9567351 (+) False AMCG00006565

Expression Profile