RNA id: TU137929


Basic Information

Item Value
RNA id TU137929
length 379
RNA type TUCP
GC content 0.50
exon number 1
gene id G110163
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6911876 ~ 6912254 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacaggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactacgccgtgaaggactgaaatcctgcagcgcccgcaaggtccccctgctcaagaaagcacatgtacaggcccgtctgaagtttgccaatgaacatctgaatgattcagaggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaactcgccgtgtttggaggagtaggaatgaccccaagaacaccatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137927 lncRNA upstream 53878 6855880 ~ 6857998 (+) True G110161
TU137910 lncRNA upstream 115882 6795749 ~ 6795994 (+) True G110147
TU137834 lncRNA upstream 691790 6218531 ~ 6220086 (+) True G110081
TU137770 lncRNA upstream 927626 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA upstream 927626 5983956 ~ 5984250 (+) False G110024
TU137933 lncRNA downstream 24990 6937244 ~ 6937664 (+) True G110167
TU137991 lncRNA downstream 231013 7143267 ~ 7143659 (+) True G110201
TU138035 lncRNA downstream 327832 7240086 ~ 7240557 (+) True G110240
TU138043 lncRNA downstream 414776 7327030 ~ 7333170 (+) True G110245
TU138041 lncRNA downstream 681033 7593287 ~ 7633119 (+) True G110243
AMCG00006505 mRNA upstream 118708 6786854 ~ 6793168 (+) True AMCG00006505
AMCG00006504 mRNA upstream 128512 6777971 ~ 6783364 (+) True AMCG00006504
AMCG00006501 mRNA upstream 364973 6541397 ~ 6546903 (+) False AMCG00006501
AMCG00006500 mRNA upstream 577033 6287734 ~ 6334843 (+) True AMCG00006500
AMCG00006499 mRNA upstream 644740 6254988 ~ 6267136 (+) True AMCG00006499
AMCG00006510 mRNA downstream 104565 7016819 ~ 7029460 (+) True AMCG00006510
AMCG00006511 mRNA downstream 145384 7057638 ~ 7058515 (+) True AMCG00006511
AMCG00006508 mRNA downstream 197090 7109344 ~ 7116757 (+) True AMCG00006508
AMCG00006509 mRNA downstream 237051 7149305 ~ 7183103 (+) True AMCG00006509
AMCG00006515 mRNA downstream 313879 7226133 ~ 7235139 (+) True AMCG00006515
TU137861 other upstream 323477 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 928967 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 928967 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 1783047 5127357 ~ 5128829 (+) False AMCG00006459
TU137474 other upstream 1813178 5080881 ~ 5098698 (+) True G109795
TU138093 other downstream 741418 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 1263506 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1810196 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 2653959 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 6098930 13011184 ~ 13043448 (+) True G111197

Expression Profile