RNA id: TU137931


Basic Information

Item Value
RNA id TU137931
length 377
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G110165
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6911876 ~ 6912252 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggtgttcttggggtcattcctactcctccaaacacggcgagttgagttgatgccaaagagctcgattttggtctcatctgaccacaacactttcacccagttctcctctgaatcattcagatgttcattggcaaacttcagacgggcctgtacatgtgctttcttgagcagggggaccttgcgggcgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcctgtgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccgagggagact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137917 lncRNA downstream 91308 6820238 ~ 6820568 (-) True G110152
TU137753 lncRNA downstream 1056374 5853814 ~ 5855502 (-) True G110015
TU137733 lncRNA downstream 1107424 5803498 ~ 5804452 (-) True G109996
TU137732 lncRNA downstream 1108615 5802572 ~ 5803261 (-) True G109995
TU137664 lncRNA downstream 1331149 5577470 ~ 5580727 (-) False AMCG00006476
TU137934 lncRNA upstream 25161 6937413 ~ 6937803 (-) True G110168
TU137935 lncRNA upstream 31935 6944187 ~ 6944474 (-) True G110169
TU137984 lncRNA upstream 194329 7106581 ~ 7107138 (-) False G110195
TU137992 lncRNA upstream 231002 7143254 ~ 7143678 (-) True G110202
TU137997 lncRNA upstream 233305 7145557 ~ 7185532 (-) True G110204
AMCG00006506 mRNA downstream 51361 6855736 ~ 6860515 (-) True AMCG00006506
AMCG00006503 mRNA downstream 132412 6778367 ~ 6779464 (-) True AMCG00006503
AMCG00006502 mRNA downstream 143085 6754781 ~ 6768791 (-) True AMCG00006502
AMCG00006498 mRNA downstream 694368 6191972 ~ 6217508 (-) True AMCG00006498
AMCG00006496 mRNA downstream 814733 6091225 ~ 6097143 (-) True AMCG00006496
AMCG00006507 mRNA upstream 85295 6997547 ~ 7004873 (-) True AMCG00006507
AMCG00006513 mRNA upstream 166068 7078320 ~ 7089125 (-) True AMCG00006513
AMCG00006512 mRNA upstream 186331 7098583 ~ 7106776 (-) True AMCG00006512
AMCG00006514 mRNA upstream 274435 7186687 ~ 7195504 (-) True AMCG00006514
AMCG00006520 mRNA upstream 681035 7593287 ~ 7621049 (-) True AMCG00006520
TU137903 other downstream 126025 6785313 ~ 6785851 (-) True G110140
TU137807 other downstream 894933 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 2746276 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 4581885 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 4781621 2097818 ~ 2130255 (-) False G108938
TU137983 other upstream 166137 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 1810136 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 1875566 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 2085385 8997637 ~ 8999264 (-) True G110570
TU138509 other upstream 2633243 9545495 ~ 9552080 (-) False G110605

Expression Profile