RNA id: TU137933


Basic Information

Item Value
RNA id TU137933
length 421
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G110167
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6937244 ~ 6937664 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttggctggggtagcaaggtgcacaggagggcgagaggcaagaggcgagaggcgagagcgagagagtggaagagcaggagaaagaagggtaaAGCTCACAGTTGatggattcactggcttatgaccctttttctggacctggaccattctccctcttgaaccccagactgtctgacaacccCCCACCagtaacgaactttgattacggactgtgactacgaacctgccttaTCCCTTTATGCTTCTGTgtgcccggtgttcggctctatcgacccgggcatttactgttattgttagtgtttgttttgtagttagggattgtttccgtttagttagtgctcggacagagctaggttttgttttgctttttgacactgtgcctgccattaagggaagcaataaaaccacagcaagcctgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137927 lncRNA upstream 79246 6855880 ~ 6857998 (+) True G110161
TU137910 lncRNA upstream 141250 6795749 ~ 6795994 (+) True G110147
TU137834 lncRNA upstream 717158 6218531 ~ 6220086 (+) True G110081
TU137770 lncRNA upstream 952994 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA upstream 952994 5983956 ~ 5984250 (+) False G110024
TU137991 lncRNA downstream 205603 7143267 ~ 7143659 (+) True G110201
TU138035 lncRNA downstream 302422 7240086 ~ 7240557 (+) True G110240
TU138043 lncRNA downstream 389366 7327030 ~ 7333170 (+) True G110245
TU138041 lncRNA downstream 655623 7593287 ~ 7633119 (+) True G110243
TU138100 lncRNA downstream 756890 7694554 ~ 7695513 (+) True G110286
AMCG00006505 mRNA upstream 144076 6786854 ~ 6793168 (+) True AMCG00006505
AMCG00006504 mRNA upstream 153880 6777971 ~ 6783364 (+) True AMCG00006504
AMCG00006501 mRNA upstream 390341 6541397 ~ 6546903 (+) False AMCG00006501
AMCG00006500 mRNA upstream 602401 6287734 ~ 6334843 (+) True AMCG00006500
AMCG00006499 mRNA upstream 670108 6254988 ~ 6267136 (+) True AMCG00006499
AMCG00006510 mRNA downstream 79155 7016819 ~ 7029460 (+) True AMCG00006510
AMCG00006511 mRNA downstream 119974 7057638 ~ 7058515 (+) True AMCG00006511
AMCG00006508 mRNA downstream 171680 7109344 ~ 7116757 (+) True AMCG00006508
AMCG00006509 mRNA downstream 211641 7149305 ~ 7183103 (+) True AMCG00006509
AMCG00006515 mRNA downstream 288469 7226133 ~ 7235139 (+) True AMCG00006515
TU137929 other upstream 24990 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 348845 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 954335 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 954335 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 1808415 5127357 ~ 5128829 (+) False AMCG00006459
TU138093 other downstream 716008 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 1238096 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1784786 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 2628549 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 6073520 13011184 ~ 13043448 (+) True G111197

Expression Profile