RNA id: TU138203


Basic Information

Item Value
RNA id TU138203
length 887
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id G110369
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7907558 ~ 7909228 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAGAAACCCATGTGTCTTACCTGCATCATCGTGACAGTGGGGTCAATCTTTGGGGGAAGTGGAATATGAATCTGGTACTTGTTTCGGTCAACACTGaaagataaacaaacatgtaaatcTGAAAAAGAGATTCAGGTAGACCTATAACACACAAttctaaatattaaaacatttttcacagtttttgaaAACTATTAAGCTCAAAAGGCACATTATTAGTGTTTATATGTAAAATCCAAAGCAAAAAGCAGGTTTATTCAGCCCCATCcagcatgaaaataaagtattggATCCATCTATCCCTATGGATAGTACGGCGAGTTCTTACCCCACTCTCATTCCTTCCTCAATGTCAGTAGGGGCGACCTGGTCACTCAGGTCCACCACAAACTTGGCAAACTGCTTCACATTGATGATGTACTTGGGATCCTCCGAGTCGGCGTTGATAATCTTGGTGCATCTGGCCACTTGTAAAGGCTGTTCACTCTGCAGGGTCTGCTTGTCTGCTGCCAGATCCCAAAGCGCCGGGGGTGCCAGGCCGGTGTCGGACTCCTTGatgcCCGTCAGCTCGTTGATTTTCTTAAGCAGTTGTTGAATATCATCCTCCACTTGCTTGATCTGTCTCGAGTATGTGCTCTGGCCATAAGTCTTCAAGAGAGCAATATCGCCTTCATCCAAAGCTCTTATGGTTTTATcctccttttcctcctccttgACTTTGCGCTGCTCGGATCCCAAATAATCTGGCATTTTCgccctgtaaataaatatttcacgCTGGTTGTTTAACTCCGATCCTGCCCGACCGACCAGGATTACACAGCAGGTTTACTCTCTTCCGCTTTTCCCGGCAGCCTCTGCGACGGCGACCGGAAACGAGAACCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138126 lncRNA downstream 150706 7756625 ~ 7756852 (-) True G110309
TU138069 lncRNA downstream 339399 7567888 ~ 7568159 (-) True G110271
TU138068 lncRNA downstream 339991 7567204 ~ 7567567 (-) True G110270
TU138067 lncRNA downstream 349090 7558205 ~ 7558468 (-) True G110269
TU138065 lncRNA downstream 356451 7550859 ~ 7551107 (-) True G110267
TU138400 lncRNA upstream 874677 8783905 ~ 8794062 (-) False G110520
TU138472 lncRNA upstream 1100912 9010140 ~ 9014326 (-) True G110576
TU138492 lncRNA upstream 1567254 9476482 ~ 9477506 (-) True G110594
TU138511 lncRNA upstream 1636267 9545495 ~ 9560104 (-) True G110605
TU138671 lncRNA upstream 2395703 10304931 ~ 10305247 (-) True G110720
AMCG00006537 mRNA downstream 1358 7901616 ~ 7906200 (-) True AMCG00006537
AMCG00006536 mRNA downstream 20449 7880134 ~ 7887109 (-) True AMCG00006536
AMCG00006527 mRNA downstream 59029 7829952 ~ 7848529 (-) True AMCG00006527
AMCG00006526 mRNA downstream 106511 7784020 ~ 7801047 (-) True AMCG00006526
AMCG00006523 mRNA downstream 188735 7694540 ~ 7718823 (-) True AMCG00006523
AMCG00006538 mRNA upstream 4195 7913423 ~ 7925635 (-) True AMCG00006538
AMCG00006542 mRNA upstream 72856 7982084 ~ 7993911 (-) True AMCG00006542
AMCG00006541 mRNA upstream 155848 8065076 ~ 8087619 (-) True AMCG00006541
AMCG00006544 mRNA upstream 178809 8088037 ~ 8090151 (-) True AMCG00006544
AMCG00006543 mRNA upstream 181456 8090684 ~ 8120577 (-) True AMCG00006543
TU137983 other downstream 818573 7078389 ~ 7088985 (-) True G110195
TU137903 other downstream 1121707 6785313 ~ 6785851 (-) True G110140
TU137807 other downstream 1890615 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 3741958 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 5577567 2324131 ~ 2329991 (-) True AMCG00006328
TU138386 other upstream 813160 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 878590 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 1088409 8997637 ~ 8999264 (-) True G110570
TU138509 other upstream 1636267 9545495 ~ 9552080 (-) False G110605
TU138641 other upstream 2178050 10087278 ~ 10107285 (-) True AMCG00006579

Expression Profile