RNA id: TU138302


Basic Information

Item Value
RNA id TU138302
length 2246
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G110444
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8173328 ~ 8175573 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTTTTGTAGTTTCATATTATACAAAAACCCACCCACATACTCACAAGCACCCAGTGCAAAAATCTCTTTGGATGCCCCTtccacaaaaacacagcaagacAAGACAGCGATTACACATCTCTTCATTGGCACACGATCAGCATTAATGTTTACCTGCAAACTGGGTTTTAAGGTTTTGTAGCTCTGCTTGCTTATGAGGAGTTTCATTTCAAACTCCAATTTAAAACCTTTaccaaaacaatgaaaaatacgTCGGCACATGAGTTCACAAAGTGAGTAATGTTTAGTATTAAATTATTatcaatttaatgaaaaacCATACTATAGTTCTCTTCTTTCTGATGGATCCAGGAGAATAAAGCATTACGCTAACTTGTTTTCCACACACcgacattcaaaataaaagtccATTAGTCTATTAATGTTTCTTAGCTCTCCGTGTGGGAGGGAGTTGGATGGGCTCTGATGCACCCTTTAACAATCTCGAGAAGAAttctaaataaaaactaattcgACAGCTTCTGCTTTTCTGCTCTGTAGGACATCACGGGGTGTGATTGCTTTGCTGCCAGATCTGGGAACCggacataaataaatcattatccAACAGCTCTGTGAACAACAATCTTAAAACGCCGAGTATGAAAGGCTGAAGACGTCAACTATGGGAATAAATATAACTTCCAAAACAATGCTGTACAAGACTATTTTACACTACCACTTGCCCATCAAGCAGTAACAGCAGCCAGACTCCCAGCGATGACATGTCATTCACAGCTGGCAAACCTGCAGCAGAAAATAACCCTCAAAACTCATTTCAGAAACTAGCACCTCGAGGCGGCTGGACACgaaacacagagcagcagaaTAAAGCTTCAGAACAAGGAACAAAGTCCGTCCACAGATTACCGTCTTTAGAAATGGCAAAATCTTTATTCTCATTCTGCCACACGAATTCAGCGGCAGGTCAAAGAAACGTCTTTTTCTAAATCAAAGACACTCAAATTATTAAGACAGGTAATGAAGtctgaaaacagcagcagtaaGCTGAACATAATGAACTCTGACTTTGACGTGTTAAGGCTGCAAACACTGTgcaactttttaaaaacaaacatccttAAATATTAAGAATAATTTAGAAACGGTAGTGTGAACTGAGAAATATAAATCTAACTGAACCGTGGTTTATTAAAATCCTCATATTTACAACAGATTTGAATAGGTGGTGACAGTAAAAGTATAGtttatacaaaaacatgtaaGCATCCTGCATTGAGTTCATATATACagatttaatatacattgttttttaaaaaaggtctAACATTTCTTTCGGTTTACatgaattattttacaatggCCTCATATGAGTGtttgaaaaatggaaaaatgcagaaagagcaccgattaaaaaaaatacagccgAGGCTCTTAACCACATACAAAACATTCAGGAATACAACTAAACAGAttcaagttttcatttaatcagattttgcTGGTAAAGGGTCAGGAAGACCACTTACATTAGCCAACAAGTTACTGCTTGCGGCTCTTTCAAAAAAGACTTGAGCAGCAGTTTCCTACGGAGGTAAAGAGGCTGTAATGTAACAGTTATTGTACTGCTGGTCTCTTAGATtactttctaaaataaaaacgtgAACAACGTCAACCAAACTCCCATGGGTGGAGTTATATTTTGGTAGAATAGATTTGTTGCCTTTGTACTTCAAATGTGAAGTTTCCTTGATTTACTGGAACTGTTCACAAGCATCAGAAATTCAAGGCATTCGGAGTTCATTAGTCTCCAAATATCCACAGGATGTTCACACCCGATAAGCCAAGATTCACTCGTCTGTCAAAAGAGAAGGGGATAAAAAGGGGTAAGTAAATGCATTCACATATACACAATGCTACTGCTGTGGAAATGTCAGTTAGCAATATTGTGGTCAATATGAAGATTATACACTTAGCATTaattttaaggaaaacaaaactatattcataaagtagttttttaaatgctcaATTTCTCAAATGGCAGCCAGGCATAATTCTGTAAATCCCTGCAGGACACAAGTAGTTTAATGTGGAAGcaaatcacaaatcaaaatgaaagaTTGAGTTCTTCAGAATAGGGCTAATGCTTGGCCTTAATGTGAATGGAAGCACAATTAGTTACTCTAAGGATTACAGAATGTTAGAAGAGGCTTTtagatttgattaaataattactctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138293 lncRNA upstream 37836 8133095 ~ 8135492 (+) True G110439
TU138275 lncRNA upstream 83201 8088037 ~ 8090127 (+) True G110429
TU138195 lncRNA upstream 258500 7913850 ~ 7914828 (+) True G110361
TU138100 lncRNA upstream 477815 7694554 ~ 7695513 (+) True G110286
TU138041 lncRNA upstream 540209 7593287 ~ 7633119 (+) True G110243
TU138305 lncRNA downstream 2948 8178521 ~ 8178728 (+) True G110446
TU138306 lncRNA downstream 3868 8179441 ~ 8179688 (+) True G110447
TU138404 lncRNA downstream 619487 8795060 ~ 8795331 (+) True G110523
TU138446 lncRNA downstream 712113 8887686 ~ 8888492 (+) True G110558
TU138486 lncRNA downstream 1281092 9456665 ~ 9456911 (+) True G110590
AMCG00006540 mRNA upstream 138496 8026690 ~ 8034832 (+) True AMCG00006540
AMCG00006539 mRNA upstream 172806 7993931 ~ 8000522 (+) True AMCG00006539
AMCG00006533 mRNA upstream 192234 7967991 ~ 7981094 (+) True AMCG00006533
AMCG00006529 mRNA upstream 206794 7955026 ~ 7966534 (+) True AMCG00006529
AMCG00006531 mRNA upstream 222348 7936383 ~ 7950980 (+) True AMCG00006531
AMCG00006546 mRNA downstream 47308 8222881 ~ 8244037 (+) True AMCG00006546
AMCG00006551 mRNA downstream 468669 8644242 ~ 8660293 (+) True AMCG00006551
AMCG00006552 mRNA downstream 535177 8710750 ~ 8722654 (+) False AMCG00006552
AMCG00006558 mRNA downstream 552070 8727643 ~ 8728326 (+) True AMCG00006558
AMCG00006556 mRNA downstream 571021 8746594 ~ 8794059 (+) True AMCG00006556
TU138093 other upstream 518134 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1261074 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1584929 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 2190419 5979062 ~ 5982909 (+) True G110023
TU138304 other downstream 187 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 546877 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1390640 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 4835611 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12761924 20937497 ~ 20938170 (+) False AMCG00006811

Expression Profile