RNA id: TU138305


Basic Information

Item Value
RNA id TU138305
length 208
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G110446
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8178521 ~ 8178728 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGCTGGCTGCGATGCCTCTTCTCGTCCTCTGAGCGGAGGAATGTCTCCAGGGACTTGAGGTCCGCCATGTAATCCTCCTTGCCCCCTGGAGAGTTGAACACGGAGGGGGAGGTCCGGTAGCGAGCCCTCAGGCTAGAGCTCTCGACTGCGCCGATGCTGCTGGGGTACGGGGAGGTGCTGGAGGAAGAGGGGCTGTAGCTCATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138302 lncRNA upstream 2948 8173328 ~ 8175573 (+) True G110444
TU138303 lncRNA upstream 2948 8174241 ~ 8175573 (+) False G110444
TU138300 lncRNA upstream 3339 8174241 ~ 8175182 (+) False G110444
TU138293 lncRNA upstream 43029 8133095 ~ 8135492 (+) True G110439
TU138275 lncRNA upstream 88394 8088037 ~ 8090127 (+) True G110429
TU138306 lncRNA downstream 713 8179441 ~ 8179688 (+) True G110447
TU138404 lncRNA downstream 616332 8795060 ~ 8795331 (+) True G110523
TU138446 lncRNA downstream 708958 8887686 ~ 8888492 (+) True G110558
TU138486 lncRNA downstream 1277937 9456665 ~ 9456911 (+) True G110590
TU138618 lncRNA downstream 1851698 10030426 ~ 10031846 (+) True G110681
AMCG00006540 mRNA upstream 143689 8026690 ~ 8034832 (+) True AMCG00006540
AMCG00006539 mRNA upstream 177999 7993931 ~ 8000522 (+) True AMCG00006539
AMCG00006533 mRNA upstream 197427 7967991 ~ 7981094 (+) True AMCG00006533
AMCG00006529 mRNA upstream 211987 7955026 ~ 7966534 (+) True AMCG00006529
AMCG00006531 mRNA upstream 227541 7936383 ~ 7950980 (+) True AMCG00006531
AMCG00006546 mRNA downstream 44153 8222881 ~ 8244037 (+) True AMCG00006546
AMCG00006551 mRNA downstream 465514 8644242 ~ 8660293 (+) True AMCG00006551
AMCG00006552 mRNA downstream 532022 8710750 ~ 8722654 (+) False AMCG00006552
AMCG00006558 mRNA downstream 548915 8727643 ~ 8728326 (+) True AMCG00006558
AMCG00006556 mRNA downstream 567866 8746594 ~ 8794059 (+) True AMCG00006556
TU138304 other upstream 1735 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 523327 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1266267 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1590122 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 2195612 5979062 ~ 5982909 (+) True G110023
TU138383 other downstream 543722 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1387485 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 4832456 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12758769 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 12869608 21048336 ~ 21049038 (+) True G112567

Expression Profile