RNA id: TU138401


Basic Information

Item Value
RNA id TU138401
length 3472
RNA type TUCP
GC content 0.41
exon number 2
gene id G110520
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8783905 ~ 8794062 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNGCACCATAACAAGGATGATCGCTTGGGTTTACCGTTATCCTCCATATGCTTTAACGGGACTGATGCAAATATCAGACTTCTAACTGACGGTTCTGGGGAGATTGAAAAATGAGCAACAAATCTGGGAAACCCTACTGAAATCCATTATGTTTAAAGGCTTTGTGGACATCCACATTTCAGCAAGGTTTCAAAAGAAAGCAGTCTGTAAGGCTTTTACTCtgccctctcctctctccctcttgatTCAGATTTTATTCTACTTTTGTGAGACTGCTTTACAAtccatcaatacatttttattacaagtAAATCCATGACTCCCTCAGATATTGTGCCATTGAATTTACTTTCatgaagttaaattaaatgtgtagtttCCATACAGCAAGCCATCTAAAATGGCAGTTAAAAAAAGCCTGACAGTCAGTTCAATGCACTGGAGAGAGATTCTTTTTccactggatttatttttaaccatgaGTAATTCACCTTCTCCTTTAAGTAACTGAAATGAGAAAGTCAAaggaaaataggaaaaacaaattaaagtagATTCTTACACTCCTGTGTCTTCCAGCAGATCTGAAGCCTTCAATGCAAAGAACCTGACATCTAGTCCTGTAAAGTATCATACAGCAAGGCTTCAACTGAACTACACACAATGTaaagaaactttttttatttttattttttttttttacataggtttggaaaaataaaaaagtagtgGAACTTATGAAGCATACATATTGGCAAATGtatgtcaaaaagcaaaaactgaGCAATACAACTGAAACCAAACAGTATAAGTAGCGGTGAGAAGAATGCTAAACCTACTCAGGAAAGGGAAATAGACCTCCAATATTAAGCTAAATGGGTTACATGTAAAGGCAATTAGCATTACAACTAGGACTAGTATGCTCTTTAAGATCTTTGTAGTTTCAGATTCAATTTAGCATTTTTATGTCAATTTATGATTCATGTGTGATGATTCTCCTTGGGGAAGATCTCACTGAGATTCACTTCTTTATTTGGCAAGTTTTTTTCAGCTTCAAGCTGTTGGCTTCAAACCACACAGAACttgaacagaaaacacaatctgGGGACAAAAAGGGAAGCGATTTGTCTGAAAAGGCACCCCGATCCACGGCCTCATTAATAATGAAGGACAATTGGCTTGATGATCTCAATCTCAGTGAGTATTTTTTACTGCATCTTGCAGCCATTTCCTTATTTGGCCGTACCTACTGGTTACCCAATACAAGTACTAATATTGTTATATTCATAGGTTTTGGCACCCTCCgggataaaaacaacaaatcagatAAAGTGCCACAAATTAACACTATACAGAAGGTTCGTCAACCTGAAGAAATATAATTCATAAAGAAGTGCAACATGTTATCAGCTAGTTTGCTAGTGTTATtaagaacaataacaacattTCTCCACAATATTGTATACAGTACTTCTTTTAGGTCACACCAAGCTATTGCAGAAATGCACTCAAAGCAAAAAAGTAGCTATGACTGAGACCAGAGAGGGTATTAGTGCAAAACCTCATTATGaggtaaattattttaaagaagtaCGAGACACTGACAGCTCAACACAAAGGCATTTGGAAAAATGTCTTTCGTGTCAAATAACTTTTGGCTGATGAAAGGAACAGCTGCTTGAAACTGTAAGCAGTTTTGGATTTGAAGTATTTCCTGGAGTGGAGATTTTATTAAAGATATTGATATTCTCCCAGGAATTTATAATCAGTTTTGGTAGGTTGCCCCTCATTCCATATTCAAAATGGCAGCACgttaaaaactgaaacactgGATCCTGaaaaaatgacatgttttatGATCAAACAGGCTTTCAATGAATTATGCCAACTGGCCAGTACCTACACATTTgataaacatataaaacatacaaaagccTGGAACAGAGATGAATCGCAGTCTAAATGGTTCGCATTACAAgtaccaagtaattacagtcTATGGTTatcaaagaaaacattgttcTTTTTCACAGATTCACAACAATAAAATTCAAAAATCATATGCATATCGGCAAAGTGCTGGAGAAGCTTAAAATGTTACAGACATCAATTTGTTTAAGAGGTTCCCAGTGTCAGCAGCCAAAAGATGCTAGGTTAAAATGGTATTGTTGCCTTAAAAAACGGCCAACACCAGTTTGTTCAAAAGTGAACAGAACACATTGTTCGTCAAGAAAATTTAACAAAGAGCTCTATCAGACTAAATGCACAATTACACAAAGAAGTGGGTGCAAATTACAGCCTAACTCTAGGCAGTCAGCAAAAACTTCCTCAAGAAGTTTCTCTCCTCACACCTAACACCTTATTCCCCGCCCGACAAACGTGAGGCCAACATGAAAGAGTCTGACGTGTGTGTCCTCAGGTTGGTTCAGTATTTGGCTTTTAAATGTTAGATGAACTAATCTGCCTCCTggatacaaaacaaatgactgCATCACGAGCGTGAAGCATTCTTCAATGTTATATGAATTATTCCGATGGTCCACCGTGACGAATGAAAAGATAGAATGAACATGAAGGATGAGACCCATTATCCATCCTGAAGGCATTCAATGGTCaatccttttcatttaaaaaagccCCCATACAGATATATTGTTAATTTCATATCAGACGTAGAAAAAACAACCCACTTCTgtacttcttctttttttcctgtgcaaactgcattttttttttgttacacacAGAGCATTGAAATACAGCAGAATTATTTTGGCAACACAGCAGCTCAGACAATAAaaggcattttttaattaatccccCCCCGCCCCATCTTTGCTCTAAGTGTCCGGTCCATTAGCTCTGCAGTAAAATGGGGTCTTCCATCTCGTGGAACATTCCGGAGCTGGCTTGGCTCTCGCCGGAGTCCGAGTCATAAAGTGCTTCAGGGAGCTCCATGAACCCGCAGGCGATCTGGTCCTCGTCCGGCTCGGATCGGATCTGCACTGGCACGTCGGCGTACTCCTCCTCCTCGGCGTTGTTGAAGTCCTGCGGGATGTACAGCATCTCGGGGTAGTTCCTGCTCACGAGGTCGCTGGTGGTGTTCAGGGAGACCTTACGGAAGGCGATGAGATGCATGTGGGAGAACTTCACGTACTTGTACCTCTTGAAGCCCAGCGACTCCACGGCCACCTTCCAGCTCTTCATCATCGCGGCGTGCCGGTTCTGGTGGGAGGAGTCGGGCGTGATGATGAGGAGCAGTCCATTCAGAGCCAGGAGTTCGTGGGCTTTCTTGCAGCAGATCCAGCGCTGATACGGCGAGGGGAAGTAGGAGAGGAGGAGCGAGAACACCACCACGTTGAAGAGCTCTCCGGGCAGGGCGTCGATGGGGTTGCGGAGCTGCTTCAGGAAGGCATCCACAGCATCTCGCGCCAGCTGGAGaggctgctgcagctgcagGTTCAACAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138203 lncRNA downstream 878590 7907558 ~ 7909228 (-) True G110369
TU138126 lncRNA downstream 1030966 7756625 ~ 7756852 (-) True G110309
TU138069 lncRNA downstream 1219659 7567888 ~ 7568159 (-) True G110271
TU138068 lncRNA downstream 1220251 7567204 ~ 7567567 (-) True G110270
TU138067 lncRNA downstream 1229350 7558205 ~ 7558468 (-) True G110269
TU138472 lncRNA upstream 216078 9010140 ~ 9014326 (-) True G110576
TU138492 lncRNA upstream 682420 9476482 ~ 9477506 (-) True G110594
TU138511 lncRNA upstream 751433 9545495 ~ 9560104 (-) True G110605
TU138671 lncRNA upstream 1510869 10304931 ~ 10305247 (-) True G110720
TU138687 lncRNA upstream 1627499 10421561 ~ 10470060 (-) True G110733
AMCG00006550 mRNA downstream 275196 8477343 ~ 8512622 (-) True AMCG00006550
AMCG00006549 mRNA downstream 363220 8419388 ~ 8424598 (-) True AMCG00006549
AMCG00006547 mRNA downstream 604264 8174241 ~ 8183554 (-) True AMCG00006547
AMCG00006548 mRNA downstream 618427 8169002 ~ 8169391 (-) True AMCG00006548
AMCG00006545 mRNA downstream 650607 8128879 ~ 8137211 (-) True AMCG00006545
AMCG00006553 mRNA upstream 57681 8851743 ~ 8856674 (-) True AMCG00006553
AMCG00006554 mRNA upstream 64283 8858345 ~ 8869522 (-) True AMCG00006554
AMCG00006559 mRNA upstream 93629 8887691 ~ 8912003 (-) True AMCG00006559
AMCG00006562 mRNA upstream 401374 9195436 ~ 9197467 (-) True AMCG00006562
AMCG00006571 mRNA upstream 777427 9571489 ~ 9587506 (-) True AMCG00006571
TU138386 other downstream 63466 8722388 ~ 8724352 (-) True G110507
TU137983 other downstream 1698833 7078389 ~ 7088985 (-) True G110195
TU137903 other downstream 2001967 6785313 ~ 6785851 (-) True G110140
TU137807 other downstream 2770875 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 4622218 4164934 ~ 4165600 (-) True G109633
TU138464 other upstream 203575 8997637 ~ 8999264 (-) True G110570
TU138509 other upstream 751433 9545495 ~ 9552080 (-) False G110605
TU138641 other upstream 1293216 10087278 ~ 10107285 (-) True AMCG00006579
TU139024 other upstream 3223820 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 3343120 12137182 ~ 12140393 (-) True AMCG00006625

Expression Profile