RNA id: TU138404


Basic Information

Item Value
RNA id TU138404
length 272
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G110523
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8795060 ~ 8795331 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttttttggtactcCACTGTCTCTCTGCATGACCTAGTTCATTTCCCTtgtataagaaatatattttgactaCCACAAGGCACAGAAGTGTTTGTattgttcaatgtttttttctttcccttttataaatgaatgtgAATGCAGTTCTGTGTGGTTTATTGTCTCTGGTAATTATGTAGGTTTAAAACGCATCTGCGTAGGAATATGAAAATGGATCCTAAAATGTCTCTTATTGTCTATGAGATGGGTGAAGATGGCAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138306 lncRNA upstream 615372 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 616332 8178521 ~ 8178728 (+) True G110446
TU138302 lncRNA upstream 619487 8173328 ~ 8175573 (+) True G110444
TU138303 lncRNA upstream 619487 8174241 ~ 8175573 (+) False G110444
TU138300 lncRNA upstream 619878 8174241 ~ 8175182 (+) False G110444
TU138446 lncRNA downstream 92355 8887686 ~ 8888492 (+) True G110558
TU138486 lncRNA downstream 661334 9456665 ~ 9456911 (+) True G110590
TU138618 lncRNA downstream 1235095 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 1574384 10369715 ~ 10369931 (+) True G110722
TU138835 lncRNA downstream 2325059 11120390 ~ 11120735 (+) True G110849
AMCG00006556 mRNA upstream 1001 8746594 ~ 8794059 (+) True AMCG00006556
AMCG00006558 mRNA upstream 66734 8727643 ~ 8728326 (+) True AMCG00006558
AMCG00006552 mRNA upstream 72406 8710750 ~ 8722654 (+) False AMCG00006552
AMCG00006551 mRNA upstream 134767 8644242 ~ 8660293 (+) True AMCG00006551
AMCG00006546 mRNA upstream 551023 8222881 ~ 8244037 (+) True AMCG00006546
AMCG00006555 mRNA downstream 4411 8799742 ~ 8807859 (+) True AMCG00006555
AMCG00006557 mRNA downstream 79142 8874473 ~ 8885595 (+) True AMCG00006557
AMCG00006561 mRNA downstream 116949 8912280 ~ 9009240 (+) True AMCG00006561
AMCG00006560 mRNA downstream 241140 9036471 ~ 9059363 (+) True AMCG00006560
AMCG00006566 mRNA downstream 679469 9474800 ~ 9476828 (+) True AMCG00006566
TU138383 other upstream 70994 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 618274 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 1139866 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1882806 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 2206661 6519865 ~ 6588399 (+) True AMCG00006501
TU138516 other downstream 770882 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 4215853 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12142166 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 12253005 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 12347534 21142865 ~ 21203201 (+) True G112600

Expression Profile