RNA id: TU138472


Basic Information

Item Value
RNA id TU138472
length 2417
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G110576
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9010140 ~ 9014326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGgggttaattttatttttgtttcgtTCTTTAAAGTCAGGTTTTTCTGtccaattaaacattttttcaaagACAATTCTGTGcatcaaaaaacataaaaattaaaacacgtACATATATTCCTACAGTGTGCAGtcaccaaaaataaacatgtcttttAGTGGTAAAGTAACACTGACCGAAACTATGCGTAACACTATTTGTACAACAGCTTCTACAGCCAATGAAAAGAAATCGATTTTCTACAATCGCAATATAGTGCCATCATATCAAACTGATACCAtctctaataaaataaaaaatccttttaaaaagatttttttatttatgcaaagaatacaataatgaaatattattttatgtaaaaccTTTCCTTGtccaaaacctttttaaatggGGTTGTTACTTATGTAAACACGTCAGGTGCAGTTAAAATGTTCCTTTGAATTCTCTACACTTACTagaacatataaatatttaacatttataattataatttgttctTGCAACATTCAAAGCTGTAAATTCAATATGgctacattttgttaaaaacacattatgtaCAAGAATTGTAATACATAAAGTATTTGGCATACTTACAACAATCTCATTATGTAATTTACAATTTCACAAGAACTgattcatgtaaatatttaatcccCATTTgacaaaaaagaagagaaaagaaaaactaaacccATACAAAAAGTGAAACATATAAAGAATGCTGTagttaatattgaaaaaaactggTCACTTTGAGTTAAGCAATCAATATACACAGTccattgaaatattaaaaaagtttGCACACAATAAAATGCTTTCCAACCACGACTTCTTGGGTCCCCACTATGCatatactgtaaaacaaattcaattacaGTATATTCTGTCAGCAATATTTCTTTCAGtccaaaaaatatgaaaaatagtttgaaaaatgtactgtacaaaCATGTAGCTAAACATTGCTTTACGTAAAAGGTCGACAAAAGCTCTGCAAATCGAGTGTTTGAGTCTTAAGGAATACAAGCCCCGTCTGAAGGGGGCTTTGGCAGCCTAGGAGGATTTTAACTACTGAAAAAGAGTACATTTCTTCATAAttcatatttgcaaatatgaaGTTGTTATTTCAAAGAGACTGCTCCACCGGAGAGTTAATTGTTAAGTAGCTATCCTGTTAAAACACCGCATGTGGTTAACTGTAATACCCATTTGTGCTTCGTCTAAATTACCTCAGTTCAGGACTACAGTACTTATATTGCTTTATACAGGCCTCATGCAATCAGAAAGCCAATGTTTTAAGTTTGCTTTTACATacacaaaatggaaaagcacaTCTCACTGAGCACAGTAAAAGTTAAATTGTACTTCAGTCGAACACTTGCAAATACTAGAGTCTAACGTTCCAGTtcacagaaaagcagaaatgttcCTTTGGCACAATACTTGGAAAACCCCACAGAGCTAATGTATAGCTAATTTTCAGGCAAGAGGATTCTTAGATACTATGCTATactgaaaaacataagaaactCCTAGCACCTTTTAGCTGTCTATTAAACTGTGACTTAACTGTGTTTCCAGTGATTTGCAGGACTTGCTGCAACaaagaaagaagaggaaaaaagaaacctcACTGTTAGAAAACCGTTCTTTAAGTATTTAAGGCAAAAAAaccctgttattttatttccttagtACATATTATGATTTAACACCTAGTAAAAATTAAGATATCCACAtatctttgttgttttcttgtaattgcagttcatgtttgtattgtgaaacGTGAAACAGCAAGATTTAAagatgctgtgaaatgaatgtCCTCACTTGATAACTTAGCAAAGTTTTTTGttcttccctcccctcccctggAACCTTGGgattaccaaaacaaaaagtgtaagAGTGCAAAATGCGTCTTCGCCGCGCCCGGAGCCTCGCTATAGCTGGGACACTTTCCTGGGCAGCGGCCGGGGCCGTGGGCCTTGCTCGCTCGCTCGCCTGCCTTCGCTCTCCAGTTTGCCAGAGCGGAGCTGGTGGGGTTTGGGCGGGAGGGCCGGGGGGTCGGAGCTCACGGGGACGGAGAGGCTGTGAGGTAGAGGCACGGGCCGCCGGGAGTTTGTGCGCTCGTACACGCTGTACGGCGGGGGCGTCTTGTTCTCCCTCCTCGTGAGTTCGTCCGAGCCGCTGGACGTGGACGTCGTCAGCATGTGTTCGCTCGGCTGGGCTTCGGTGCCGGACGTCTCCGACACGCTGCAGCGGCTGAGGGAGGAAATCCCGCTGCTGTAGCTTCCTGACAGGACCGGAGAATTGGAGACCAACCCAGAAGACTGGCACTCAGTTGGAGACGGTGTGAAGGACTGGATGGAGGCTTTTGCGGCGATCTGGGGGTGGGGACCGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138400 lncRNA downstream 216078 8783905 ~ 8794062 (-) False G110520
TU138203 lncRNA downstream 1100912 7907558 ~ 7909228 (-) True G110369
TU138126 lncRNA downstream 1253288 7756625 ~ 7756852 (-) True G110309
TU138069 lncRNA downstream 1441981 7567888 ~ 7568159 (-) True G110271
TU138068 lncRNA downstream 1442573 7567204 ~ 7567567 (-) True G110270
TU138492 lncRNA upstream 462156 9476482 ~ 9477506 (-) True G110594
TU138511 lncRNA upstream 531169 9545495 ~ 9560104 (-) True G110605
TU138671 lncRNA upstream 1290605 10304931 ~ 10305247 (-) True G110720
TU138687 lncRNA upstream 1407235 10421561 ~ 10470060 (-) True G110733
TU138722 lncRNA upstream 1588769 10603095 ~ 10603733 (-) True G110757
AMCG00006559 mRNA downstream 98137 8887691 ~ 8912003 (-) True AMCG00006559
AMCG00006554 mRNA downstream 140618 8858345 ~ 8869522 (-) True AMCG00006554
AMCG00006553 mRNA downstream 153466 8851743 ~ 8856674 (-) True AMCG00006553
AMCG00006550 mRNA downstream 497518 8477343 ~ 8512622 (-) True AMCG00006550
AMCG00006549 mRNA downstream 585542 8419388 ~ 8424598 (-) True AMCG00006549
AMCG00006562 mRNA upstream 181110 9195436 ~ 9197467 (-) True AMCG00006562
AMCG00006571 mRNA upstream 557163 9571489 ~ 9587506 (-) True AMCG00006571
AMCG00006570 mRNA upstream 574605 9588931 ~ 9592122 (-) True AMCG00006570
AMCG00006573 mRNA upstream 591212 9605538 ~ 9606425 (-) True AMCG00006573
AMCG00006572 mRNA upstream 609759 9624085 ~ 9625892 (-) True AMCG00006572
TU138464 other downstream 10876 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 216078 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 285788 8722388 ~ 8724352 (-) True G110507
TU137983 other downstream 1921155 7078389 ~ 7088985 (-) True G110195
TU137903 other downstream 2224289 6785313 ~ 6785851 (-) True G110140
TU138509 other upstream 531169 9545495 ~ 9552080 (-) False G110605
TU138641 other upstream 1072952 10087278 ~ 10107285 (-) True AMCG00006579
TU139024 other upstream 3003556 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 3122856 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 3861966 12876292 ~ 12878656 (-) False AMCG00006641

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU83673 True 251 lncRNA 0.39 2 NC_048565.1 68232213 ~ 68285626 (+)
mexican tetra (Astyanax mexicanus) TU83673 True 3353 lncRNA 0.42 2 NC_035903.1 4999241 ~ 5002904 (+)