RNA id: TU138618


Basic Information

Item Value
RNA id TU138618
length 1421
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G110681
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10030426 ~ 10031846 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTGTTCTAACCTTACTAGGTGTTAACTGTCATCTTACCAATTCAATACAACATTGAACAGACAATGCTTAAAATAAGATTGCAAGAGCAAATCAGaatgaagaaaacatacaaagaggctttttattcaatacaagaaataaatagaGCAGGGAATGGATTATGGAGCCCACACACTGACCAGGAAATCATTGGCTGGATGATGCTCTCCTATTCCCTGGCACAGTTCTGCAACAGGGGGCTTAGTGTGTAACTTTCTGTGGAGATCTGCCATAGTGTGAGCTACAAAATTGCCCTAGggttgctgtgtttttgtatgtcaGTGAGAGTTTTATTGCACGGCTTGATTGTCTCAATAAAGCCCCTTTCTGAAGTCAGTCCAAGATCCACAGCTTTTTCTGGGATGGGCATCTCAGTCTGTCACTGAATATGTGCCTCGTACTGAGTCAGTGAAGAattaagccccattcacacagaaacgtTTGCAGCCTTttttgtggcattttgttgACAGAAAGGTTGGGGTGAAACAGTCGAAGATGATATTTCAACACCAGGAACTTTCCACCAGCAGCaacgggtctgtgtgaatggagcaggataGGAATGACAGCATAAGACTCATCACGTCCTTGCATTCTTATAACTGgcataaccaatcagaataggggtgagtttttcttatttattttagttgatttcactttgctgcagtatatgtcaagaccccacacaatgcctcttgTTACGCTACCATGAAGCGAGAGCTGAGTTGAACTGGGTTCACTGATTCAAATGACCTGAGAttgctgggtccagtgaccacactgtaaaaacacacaaccatacaacctgatGACCTGGTCATAGCGCAAAAATTCACCTAGATTGACGTATCCTGACAATTTGTTCTTCATTCTATTTGTTCCGAACTGAACCGGCACTCTGGTTAGGACCAATAGCACAGTAACCACagtggaaggaaactggcaaaatgtGGAAATTATCAAACTATtacaaacacatccagaatATCAGTCCATGTCTACTCTCCCGAATCCACATGCTTCTATTGCATGTCGTTCCTAAGGCTACAATGCTCTTTTCGGCATTCTCTTGAATGGGTACCTCCCAACATTTTGCCAGCATTCAaagtcagtgtgaatgggggtgcaataggaaaaaaactggaaaatgctGCCTGCTTTTTGCTTGAATTTGAGTGTGAAAGGGACTTCTGATACTAGATGGTGCAAAGTATTCCAGGACAGTGTGAATCCACGTCTCAGAGGTTAATAAGAAGTGGTCCAGGTTAGATCAAACAGGACTGAGTAGACTTGTGCTGTCTGAGTACCTTCCCCCgaccctggaaaaaaaaagagaaaagtaaaagaatttaaaacataatctgAAAGCCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138486 lncRNA upstream 573515 9456665 ~ 9456911 (+) True G110590
TU138446 lncRNA upstream 1141934 8887686 ~ 8888492 (+) True G110558
TU138404 lncRNA upstream 1235095 8795060 ~ 8795331 (+) True G110523
TU138306 lncRNA upstream 1850738 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 1851698 8178521 ~ 8178728 (+) True G110446
TU138673 lncRNA downstream 337869 10369715 ~ 10369931 (+) True G110722
TU138835 lncRNA downstream 1088544 11120390 ~ 11120735 (+) True G110849
TU138877 lncRNA downstream 1318038 11349884 ~ 11350117 (+) True G110883
TU138920 lncRNA downstream 1639723 11671569 ~ 11672448 (+) True G110916
TU138936 lncRNA downstream 1761322 11793168 ~ 11793535 (+) True G110930
AMCG00006577 mRNA upstream 46199 9968172 ~ 9984227 (+) True AMCG00006577
AMCG00006576 mRNA upstream 178098 9850650 ~ 9852328 (+) True AMCG00006576
AMCG00006574 mRNA upstream 190562 9806029 ~ 9839864 (+) True AMCG00006574
AMCG00006575 mRNA upstream 278531 9721539 ~ 9751895 (+) True AMCG00006575
AMCG00006567 mRNA upstream 373810 9653307 ~ 9656616 (+) True AMCG00006567
AMCG00006581 mRNA downstream 128147 10159993 ~ 10179843 (+) True AMCG00006581
AMCG00006590 mRNA downstream 480326 10512172 ~ 10518858 (+) True AMCG00006590
AMCG00006589 mRNA downstream 561451 10593297 ~ 10617772 (+) True AMCG00006589
AMCG00006596 mRNA downstream 729322 10761168 ~ 10763850 (+) True AMCG00006596
AMCG00006595 mRNA downstream 754414 10786260 ~ 10818604 (+) True AMCG00006595
TU138516 other upstream 463075 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 1306360 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 1853640 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 2375232 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 3118172 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 2979338 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 10905651 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 11016490 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 11111019 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 14000267 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile